| Protein: | MYF6_MOUSE |
| Organism: | Mus musculus |
| Length: | 242 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYF6_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
218.0 | [0..1] | [242..1] |
|
|
214.0 | [0..1] | [242..1] |
|
|
211.0 | [0..1] | [242..1] |
|
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210.0 | [0..1] | [242..1] |
|
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185.0 | [0..1] | [242..1] |
|
|
174.0 | [0..3] | [241..1] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MMMDLFETGS YFFYLDGENV TLQPLEVAEG SPLYPGSDGT LSPCQDQMPQ EAGSDSSGEE 60
61 HVLAPPGLQP PHCPGQCLIW ACKTCKR
|
| Detection Method: |  |
| Confidence: | 35.657577 |
| Match: | PF01586.7 |
| Description: | No description for PF01586.7 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [88-154] |
1 11 21 31 41 51
| | | | | |
1 KSAPTDRRKA ATLRERRRLK KINEAFEALK RRTVANPNQR LPKVEILRSA ISYIERLQDL 60
61 LHRLDQQ
|
| Detection Method: | |
| Confidence: | 15.39794 |
| Match: | 1mdyA |
| Description: | Myod B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| transcription activator activity | 3.87875547821718 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.42035985454056 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.39500382187264 | bayes_pls_golite062009 |
| protein binding | 2.64975291677725 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| transcription repressor activity | 2.58751248599889 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 2.42306484786159 | bayes_pls_golite062009 |
| transcription corepressor activity | 2.03674713048499 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| promoter binding | 0.8576109846276 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.53175615551166 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
| protein dimerization activity | 0.20674648626116 | bayes_pls_golite062009 |
|
Region A: Residues: [155-242] |
1 11 21 31 41 51
| | | | | |
1 EKMQELGVDP YSYKPKQEIL EGADFLRTCS PQWPSVSDHS RGLVITAKEG GANVDASASS 60
61 SLQRLSSIVD SISSEERKLP SVEEVVEK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
