| Protein: | RU1C_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 182 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RU1C_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
130.0 | [0..1] | [64..1] |
|
|
130.0 | [0..1] | [101..1] |
|
|
128.0 | [0..1] | [64..166] |
|
|
128.0 | [0..1] | [105..1] |
|
|
127.0 | [0..1] | [91..1] |
|
|
127.0 | [0..1] | [105..1] |
|
|
126.0 | [0..1] | [104..1] |
|
|
120.0 | [0..1] | [64..90] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MPRYLCDYCQ VWLTHDSQSV RKAHNAGRAH IQNVQDYYTK VAQEEAQKQL EERASSGFLK 60
61 KGNGSLDLPY AYAFPPKYNV FNLGCP
|
| Detection Method: |  |
| Confidence: | 27.0 |
| Match: | 1uw2A |
| Description: | The structure of the zinc finger from the human spliceosomal protein U1C |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| U1 snRNA binding | 4.35911393951689 | bayes_pls_golite062009 |
| transcription regulator activity | 3.60566283434269 | bayes_pls_golite062009 |
| DNA binding | 3.55661236227495 | bayes_pls_golite062009 |
| nucleic acid binding | 3.48507500696529 | bayes_pls_golite062009 |
| snRNA binding | 3.38579636849163 | bayes_pls_golite062009 |
| RNA binding | 3.1651307444578 | bayes_pls_golite062009 |
| transcription factor activity | 2.66585743129629 | bayes_pls_golite062009 |
| binding | 2.51459778938853 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.8286807075508 | bayes_pls_golite062009 |
| transcription activator activity | 1.42518458564872 | bayes_pls_golite062009 |
| mRNA binding | 1.30742677372942 | bayes_pls_golite062009 |
| chromatin binding | 0.89589330553881 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.8936929860974 | bayes_pls_golite062009 |
| transcription repressor activity | 0.882178479686399 | bayes_pls_golite062009 |
| transcription factor binding | 0.67452735768188 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.47352407708364 | bayes_pls_golite062009 |
| protein binding | 0.308413944574415 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.26487559807277 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.240825841910931 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.0129353639725593 | bayes_pls_golite062009 |
|
Region A: Residues: [87-182] |
1 11 21 31 41 51
| | | | | |
1 PPPYIVSANT YMAPKGMNAM NAAAFVPMMP AVNLTNQVAF SAPQTTASSN TQLTQQQQSL 60
61 PQTNEHQRAR THSNANNHFT KTHHQGQRSH QRFVRA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
