YRC Public Data Repository - Protein Structure Prediction

Protein:	DHX15_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	735 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHX15_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|44980626 - gi\|44980626\|gb\|AAS50547.1\| AAR180Cp [Ashbya gossypii ATCC 10895] gi\|45185005, gi\|... - gi\|45185005\|ref\|NP_982723.1\| AAR180Cp [Ashbya gossypii ATCC 10895], gi\|44980626\|gb\|AAS50547.1\| AAR18...	560.0	[0..7]	[734..25]
gi\|49646806 - gi\|49646806\|emb\|CAG83191.1\| YALI0B15642p [Yarrowia lipolytica] gi\|49646806, gi\|... - gi\|50546941\|ref\|XP_500940.1\| YALI0B15642p [Yarrowia lipolytica], gi\|49646806\|emb\|CAG83191.1\| unnamed...	557.0	[0..1]	[730..1]
gi\|49525586 - gi\|49525586\|emb\|CAG59203.1\| unnamed protein product [Candida glabrata] gi\|50287699, gi\|... - gi\|50287699\|ref\|XP_446279.1\| unnamed protein product [Candida glabrata], gi\|49525586\|emb\|CAG59203.1\|...	557.0	[0..7]	[728..28]
gi\|49640687 - gi\|49640687\|emb\|CAH01948.1\| KLLA0B00561p [Kluyveromyces lactis] gi\|49640687, gi\|... - gi\|50303227\|ref\|XP_451555.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640687\|emb\|CAH0194...	555.0	[0..6]	[731..20]
gi\|151943690 - gi\|151943690\|gb\|EDN62000.1\| RNA helicase [Saccharomyces cerevisiae YJM789] PRP43 - RNA helicase in the DEAH-box family, functions in both RNA polymerase I and polymerase II transcript... PRP43_YEAST - Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae (strain ATCC 2...	552.0	[0..6]	[729..21]
DEAH2_ARATH - Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsis thaliana GN=At3g62...	550.0	[0..53]	[735..39]
gi\|68370298 - gi\|68370298\|ref\|XP_685860.1\| PREDICTED: similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (...	547.0	[0..1]	[727..472]
gi\|68468650, gi\|... - gi\|68468650\|ref\|XP_721644.1\| potential spliceosomal RNA helicase [Candida albicans SC5314], gi\|68468... gi\|238880587 - gi\|238880587\|gb\|EEQ44225.1\| pre-mRNA splicing factor ATP-dependent RNA helicase PRP43 [Candida albic... orf19.1687, orf1... - orf19.1687 CGDID:CAL0000153 Assembly 19, Contig19-10123 (183467, 181164) CDS, reverse complemented, ...	546.0	[0..4]	[727..19]
gi\|114145427, gi... - gi\|37654286\|gb\|AAQ96248.1\| LRRGT00035 [Rattus norvegicus], gi\|114145427\|ref\|NP_001041309.1\| DEAH (As...	546.0	[0..1]	[725..451]

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Predicted Domain #1

Region A:
Residues: [1-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPAQKKLRQ ESKNPYLAHL NNGDDSEEVV SSKGLTRRAT TVAQAAKAEE GPNNFFNDKP  60
   61 FSQNYFKILE TRRELPVYQQ REEFLKIYHE NQIIVFVGET GSGKTTQIPQ FVLYDELPHL 120
  121 TNTQIACTQP RRVAAMSVAK RVADEMDVDL GEEVGYNIRF EDCSGPNTLL KYMTDGMLLR 180
  181 EAMTDHMLSR YSCIILDEAH ERTLATDILM GLMKRLATRR PDLKIIVMSA TLDAKKFQKY 240
  241 FFDAPLLAVP GRTYPVEIYY TQEPERDYLE AALRTVLQIH VEEGPGDILV FLTGEEEIED 300
  301 ACRKITLEAD DLVREGAAGP LKVYPLYGSL PPNQQQRIFE PTPEDTKSGY GRKVVISTNI 360
  361 AETSLTIDGI VYVVDPGFSK QKIYNPRIRV ESLLVSPISK ASAQQRAGRA GRTRPGKCFR 420
  421 LYTEEAFRKE LIEQTYPEIL RS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.69897
Match:	2j0qA
Description:	No description for 2j0qA was found.

Predicted functions:

Term	Confidence	Notes
	4.704140727858	bayes_pls_golite062009
binding	2.44689197844883	bayes_pls_golite062009
RNA binding	2.29590582680214	bayes_pls_golite062009
structural constituent of ribosome	1.57653963868443	bayes_pls_golite062009
RNA helicase activity	1.42791449104435	bayes_pls_golite062009
nucleic acid binding	1.41477043612798	bayes_pls_golite062009
RNA-dependent ATPase activity	1.39335733374328	bayes_pls_golite062009
ATP-dependent RNA helicase activity	1.36724390116598	bayes_pls_golite062009
DNA binding	1.11699929651302	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
transcription regulator activity	0.989226939888218	bayes_pls_golite062009
mRNA binding	0.76699944561918	bayes_pls_golite062009
helicase activity	0.6191010101321	bayes_pls_golite062009
motor activity	0.61636596887462	bayes_pls_golite062009
structural molecule activity	0.596382945962261	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.461763181659193	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.458831409927227	bayes_pls_golite062009
pyrophosphatase activity	0.455976987338331	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.422944846459286	bayes_pls_golite062009
snRNA binding	0.418985924846052	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	0.338958888186454	bayes_pls_golite062009
purine NTP-dependent helicase activity	0.29664013896754	bayes_pls_golite062009
ATP-dependent helicase activity	0.29664013896754	bayes_pls_golite062009
translation release factor activity	0.178286731022211	bayes_pls_golite062009
translation termination factor activity	0.151456842619444	bayes_pls_golite062009
nucleotide binding	0.114848452385726	bayes_pls_golite062009
purine nucleotide binding	0.10713474095071	bayes_pls_golite062009
purine ribonucleotide binding	0.0916519414118148	bayes_pls_golite062009
ribonucleotide binding	0.0915913646217636	bayes_pls_golite062009
protein binding	0.071010918255742	bayes_pls_golite062009
transcription factor activity	0.0434163635422169	bayes_pls_golite062009
cytoskeletal protein binding	0.0272673919333979	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [443-489]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLSSTVLELK KLGIDDLVHF DYMDPPAPET MMRALEELNY LNCLDDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.30103
Match:	2d7dA
Description:	No description for 2d7dA was found.

Predicted Domain #3

Region A:
Residues: [490-583]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLTPLGRKA SEFPLDPNLA VMLIRSPEFY CSNEVLSLTA LLSVPNVFVR PNSARKLADE  60
   61 MRQQFTHPDG DHLTLLNVYH AYKSGEGTAD WCWN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.13
Match:	2v8oA
Description:	No description for 2v8oA was found.

Predicted Domain #4

Region A:
Residues: [584-735]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HFLSHRALIS ADNVRKQLRR TMERQEVELI STPFDDKNYY VNIRRALVSG FFMQVAKKSA  60
   61 NGKNYVTMKD NQVVSLHPSC GLSVTPEWVV YNEFVLTTKS FIRNVTAIRP EWLIELAPNY 120
  121 YDLDDFDNNK EVKSALQKVY QMAARSKKNA RR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.886057
Match:	PF07717.7
Description:	No description for PF07717.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: