YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229680434, gi...
Organism:	Yersinia pestis Nepal516
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229680434, gi....

Description	E-value	Query Range	Subject Range
gi\|21958700, gi\|... - gi\|22125776\|ref\|NP_669199.1\| inner membrane permease of oligogalacturonide ABC transporter [Yersinia...	2.0E-50	[1..306]	[23..328]
gi\|77975227 - gi\|77975227\|ref\|ZP_00830763.1\| COG0395: ABC-type sugar transport system, permease component [Yersini...	1.0E-45	[1..306]	[1..306]
gi\|77959134 - gi\|77959134\|ref\|ZP_00823157.1\| COG0395: ABC-type sugar transport system, permease component [Yersini...	1.0E-45	[1..306]	[1..306]
gi\|77962021 - gi\|77962021\|ref\|ZP_00825847.1\| COG0395: ABC-type sugar transport system, permease component [Yersini...	2.0E-45	[1..306]	[1..306]
gi\|77980112 - gi\|77980112\|ref\|ZP_00835527.1\| COG0395: ABC-type sugar transport system, permease component [Yersini...	2.0E-45	[1..306]	[1..306]
gi\|69287966, gi\|... - gi\|69287966\|ref\|ZP_00618123.1\| Binding-protein-dependent transport systems inner membrane component ...	8.0E-45	[2..306]	[702..1018]
gi\|6822233, gi\|2... - gi\|6822233\|emb\|CAB70939.1\| putative transport system membrane protein [Streptomyces coelicolor A3(2)...	1.0E-42	[4..306]	[1..303]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	1.0E-42	[56..305]	[170..441]
gi\|56908333, gi\|... - gi\|56962098\|ref\|YP_173821.1\| sugar ABC transporter permease [Bacillus clausii KSM-K16], gi\|56908333\|...	1.0E-41	[6..306]	[14..310]
gi\|29833356, gi\|... - gi\|29833356\|ref\|NP_827990.1\| ABC transporter permease protein [Streptomyces avermitilis MA-4680], gi...	1.0E-41	[8..306]	[3..302]

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Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVQQTSNQ KKSDLAQDIA DAEISRTLRK AKVSAAFRYI VLIIVGLLML YPLLWMFSAA  60
   61 FKPNNEIFTT LGLWPEHPTS DGFINGWKTG TEYNFGHYML NTFKYVIPKV ILTIISSTIV 120
  121 AYGFARFEIP WKKFWFTTLI TTMLLPSTVL LIPQYIMFRE MGMLNSYLPL YLPLAFATQG 180
  181 FFVFMLIQFL RGVPRDMEEA AQIDGCNSFQ VLWYVVVPIL KPAIISVALF QFMWSMNDFI 240
  241 GPLIYVYSVD KYPIALALKM SIDVTEGAPW NEILAMASIS ILPSIIVFFL AQRYFVQGVT 300
  301 SSGIKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
maltose transmembrane transporter activity	8.28826189049497	bayes_pls_golite062009
disaccharide transmembrane transporter activity	8.28826189049497	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	8.28826189049497	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	8.24190569178573	bayes_pls_golite062009
maltose-transporting ATPase activity	8.24190569178573	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	8.24190569178573	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	7.98776119907207	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.98726234902655	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.98726234902655	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.97287417765536	bayes_pls_golite062009
primary active transmembrane transporter activity	7.96249144456164	bayes_pls_golite062009
active transmembrane transporter activity	7.8678894318504	bayes_pls_golite062009
glucoside transmembrane transporter activity	7.52498147729237	bayes_pls_golite062009
maltooligosaccharide-importing ATPase activity	7.32447511329936	bayes_pls_golite062009
ATPase activity, coupled	7.29227234008448	bayes_pls_golite062009
ATPase activity	6.94069583578738	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.59903874016214	bayes_pls_golite062009
pyrophosphatase activity	6.52169210550643	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.50067149801529	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.5003333073452	bayes_pls_golite062009
sugar transmembrane transporter activity	5.77004935785912	bayes_pls_golite062009
glycerol transmembrane transporter activity	5.18950109645555	bayes_pls_golite062009
alcohol transmembrane transporter activity	4.82807078807389	bayes_pls_golite062009
polyol transmembrane transporter activity	4.82807078807389	bayes_pls_golite062009
hydrolase activity	4.78607811092587	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	4.63318176881689	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.86345398417242	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	3.38648305647717	bayes_pls_golite062009
sugar:hydrogen symporter activity	2.72644761294537	bayes_pls_golite062009
cation:sugar symporter activity	2.72644761294537	bayes_pls_golite062009
ion transmembrane transporter activity	2.70116960945763	bayes_pls_golite062009
carbohydrate-importing ATPase activity	2.35016331368678	bayes_pls_golite062009
carbohydrate-transporting ATPase activity	2.32845065117258	bayes_pls_golite062009
solute:hydrogen symporter activity	1.84116772499041	bayes_pls_golite062009
cation transmembrane transporter activity	1.82526327874202	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	1.56112505527856	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	1.00737155315764	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.69074662322395	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
anion transmembrane transporter activity	0.38505555521505	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	0.171737154712589	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.14639856424105	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: