| Protein: | MSX3_MOUSE |
| Organism: | Mus musculus |
| Length: | 204 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSX3_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
133.0 | [0..26] | [163..56] |
|
|
131.0 | [0..1] | [204..20] |
|
|
130.0 | [0..3] | [194..70] |
|
|
127.0 | [0..85] | [163..1] |
|
|
125.0 | [0..24] | [198..87] |
|
|
125.0 | [0..79] | [162..3] |
|
|
124.0 | [0..82] | [164..1] |
|
|
124.0 | [0..12] | [202..130] |
|
Region A: Residues: [1-204] |
1 11 21 31 41 51
| | | | | |
1 MARATFDMNA AGLEARGGGH TEHGPLPFSV ESLLEAERVP GSESGELGVE RPLGASKPGA 60
61 WPPPVAHSCP PRAPSPPPCT LRKHKTNRKP RTPFTTAQLL ALERKFHQKQ YLSIAERAEF 120
121 SSSLSLTETQ VKIWFQNRRA KAKRLQEAEL EKLKLAAKPL LPAAFALPFP LGTQLHSSAA 180
181 TFGGNAVPGI LAGPVAAYGM YYLS
|
| Detection Method: |  |
| Confidence: | 26.69897 |
| Match: | 1pufA |
| Description: | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| transcription repressor activity | 3.55154985983449 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.49423102874486 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 1.41914532284031 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 1.41914532284031 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| histone binding | 0.557787598121402 | bayes_pls_golite062009 |
| N-acyltransferase activity | 0.354455864390293 | bayes_pls_golite062009 |
| N-acetyltransferase activity | 0.141579851073927 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.141400887946529 | bayes_pls_golite062009 |
