| Protein: | gi|108706704 |
| Organism: | Oryza sativa Japonica Group |
| Length: | 586 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108706704.
| Description | E-value | Query Range |
Subject Range |
|
|
487.0 | [0..1] | [586..1] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MGKKQHSKDR MFITRTEWAT EWGGAKQKEA GTPFKRLPFY CCALTFLPFE DPVCTADGSV 60
61 FDLMSIIPYI KKFGKHPVTG TPLKQEDLMP LTFHKNSDGE FQCPVLNKVF T
|
| Detection Method: |  |
| Confidence: | 13.30103 |
| Match: | 2f42A |
| Description: | No description for 2f42A was found. |
|
Region A: Residues: [112-171] |
1 11 21 31 41 51
| | | | | |
1 EFTHIVAVKT TGNVFCYEAI QELNIKPKNW RELLTDEPFT RNDLITIQNP NAVDSKILGE 60
61
|
| Detection Method: | |
| Confidence: | 2.24 |
| Match: | 1e4uA |
| Description: | Not-4 N-terminal RING finger domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.70912934275371 | bayes_pls_golite062009 |
| transcription regulator activity | 1.58888342715984 | bayes_pls_golite062009 |
| protein binding | 1.48593945455888 | bayes_pls_golite062009 |
| RNA binding | 1.42623805123899 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.29842157714791 | bayes_pls_golite062009 |
| nucleic acid binding | 1.21287410633544 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.11631628759929 | bayes_pls_golite062009 |
| DNA binding | 1.00709690792313 | bayes_pls_golite062009 |
| 0.982349466622335 | bayes_pls_golite062009 | |
| ligase activity | 0.424146907469434 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.405909265264862 | bayes_pls_golite062009 |
| transcription factor activity | 0.3885123241249 | bayes_pls_golite062009 |
| transcription factor binding | 0.265920091724011 | bayes_pls_golite062009 |
| catalytic activity | 0.168711389690753 | bayes_pls_golite062009 |
|
Region A: Residues: [172-328] |
1 11 21 31 41 51
| | | | | |
1 FDHVKKGLKL EDEELQRMKN DPTYNINISG DLKQMIKELG TEKGKLAFLH GGGGQKAQKE 60
61 RAAALAAILA KKEKDDSKSG KEPKPHQPFS IVDAASASVH GRSAAAAKAA TAEKTAARIA 120
121 MHMAGDRAPV NAKLVKSRYT TGAASRSFTS TAYDPVT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [329-586] |
1 11 21 31 41 51
| | | | | |
1 KNELEYVKVE KNPKKKGYVQ LHTTHGDLNL ELHCDITPRT CENFLTHCEN GYYNGLIFHR 60
61 SIKNFMIQGG DPTGTGSGGE SIWGKPFKDE LNSKLIHSGR GVVSMANSGP HTNGSQFFIL 120
121 YKSAPHLNFK HTVFGMVVGG LTTLSAMEKV PVDDDDRPLE EIKILKVSVF VNPYTEPDEE 180
181 EEEKAKEEEK KKDEDYDKVG SWYSNPGTGV AGSTSSGGGV GKYLKARTAG FADVVADDSN 240
241 KKRKASVSNV EFKDFSGW
|
| Detection Method: | |
| Confidence: | 51.30103 |
| Match: | 1zkcA |
| Description: | Crystal Structure of the cyclophiln_RING domain of human peptidylprolyl isomerase (cyclophilin)-like 2 isoform b |
Matching Structure (courtesy of the PDB): |
|
