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Protein Overview: gi|108706704

General Information:
Name(s) found: gi|108706704 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108706704|gb|ABF94499.1| peptidylprolyl isomerase, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 586 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKQHSKDR MFITRTEWAT EWGGAKQKEA GTPFKRLPFY CCALTFLPFE DPVCTADGSV  60
   61 FDLMSIIPYI KKFGKHPVTG TPLKQEDLMP LTFHKNSDGE FQCPVLNKVF TEFTHIVAVK 120
  121 TTGNVFCYEA IQELNIKPKN WRELLTDEPF TRNDLITIQN PNAVDSKILG EFDHVKKGLK 180
  181 LEDEELQRMK NDPTYNINIS GDLKQMIKEL GTEKGKLAFL HGGGGQKAQK ERAAALAAIL 240
  241 AKKEKDDSKS GKEPKPHQPF SIVDAASASV HGRSAAAAKA ATAEKTAARI AMHMAGDRAP 300
  301 VNAKLVKSRY TTGAASRSFT STAYDPVTKN ELEYVKVEKN PKKKGYVQLH TTHGDLNLEL 360
  361 HCDITPRTCE NFLTHCENGY YNGLIFHRSI KNFMIQGGDP TGTGSGGESI WGKPFKDELN 420
  421 SKLIHSGRGV VSMANSGPHT NGSQFFILYK SAPHLNFKHT VFGMVVGGLT TLSAMEKVPV 480
  481 DDDDRPLEEI KILKVSVFVN PYTEPDEEEE EKAKEEEKKK DEDYDKVGSW YSNPGTGVAG 540
  541 STSSGGGVGK YLKARTAGFA DVVADDSNKK RKASVSNVEF KDFSGW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] PSI-BLAST 13.30103 No description for 2f42A was found.
    2 View Details [112..171] FFAS03 2.24 Not-4 N-terminal RING finger domain
    3 View Details [172..328] deduced N/A No confident structure predictions are available.
    4 View Details [329..586] PSI-BLAST 51.30103 Crystal Structure of the cyclophiln_RING domain of human peptidylprolyl isomerase (cyclophilin)-like 2 isoform b

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.70912934275371 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.58888342715984 bayes_pls_golite062009
  • protein binding
    		•  1.48593945455888 bayes_pls_golite062009
  • RNA binding
    		•  1.42623805123899 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.29842157714791 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.21287410633544 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  1.11631628759929 bayes_pls_golite062009
  • DNA binding
    		•  1.00709690792313 bayes_pls_golite062009
    		• 0.982349466622335 bayes_pls_golite062009
  • ligase activity
    		•  0.424146907469434 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.405909265264862 bayes_pls_golite062009
  • transcription factor activity
    		•  0.3885123241249 bayes_pls_golite062009
  • transcription factor binding
    		•  0.265920091724011 bayes_pls_golite062009
  • catalytic activity
    		•  0.168711389690753 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle