| Protein: | VPS25 |
| Organism: | Homo sapiens |
| Length: | 176 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS25.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-82 | [1..176] | [186..361] |
|
|
4.0E-78 | [1..176] | [27..202] |
|
|
9.0E-77 | [1..176] | [1..176] |
|
|
3.0E-76 | [1..176] | [1..176] |
|
|
3.0E-76 | [1..176] | [1..176] |
|
|
4.0E-76 | [2..176] | [1..175] |
|
|
1.0E-75 | [2..176] | [8..182] |
|
Region A: Residues: [1-176] |
1 11 21 31 41 51
| | | | | |
1 MAMSFEWPWQ YRFPPFFTLQ PNVDTRQKQL AAWCSLVLSF CRLHKQSSMT VMEAQESPLF 60
61 NNVKLQRKLP VESIQIVLEE LRKKGNLEWL DKSKSSFLIM WRRPEEWGKL IYQWVSRSGQ 120
121 NNSVFTLYEL TNGEDTEDEE FHGLDEATLL RALQALQQEH KAEIITVSDG RGVKFF
|
| Detection Method: |  |
| Confidence: | 54.0 |
| Match: | 1u5tC |
| Description: | Structure of the ESCRT-II endosomal trafficking complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.77201910025409 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| DNA binding | 3.44642410378325 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| transcription factor activity | 2.83460075788873 | bayes_pls_golite062009 |
| transcription repressor activity | 2.39237599101586 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.08341148210578 | bayes_pls_golite062009 |
| transcription activator activity | 1.98504395280033 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.35380365970626 | bayes_pls_golite062009 |
| transferase activity | 1.0863867010063 | bayes_pls_golite062009 |
| signal transducer activity | 0.968719315363638 | bayes_pls_golite062009 |
| molecular transducer activity | 0.968719315363638 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| transcription factor binding | 0.63938506997853 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.0565989703351002 | bayes_pls_golite062009 |
