| Protein: | gi|16517172, gi|... |
| Organism: | Homo sapiens |
| Length: | 893 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16517172, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..893] | [1..893] |
|
|
0.0 | [1..893] | [1..893] |
|
|
0.0 | [1..893] | [1..890] |
|
|
0.0 | [1..893] | [1..836] |
|
|
0.0 | [1..893] | [1..977] |
|
Region A: Residues: [1-197] |
1 11 21 31 41 51
| | | | | |
1 MAQFYYKRNV NAPYRDRIPL RIVRAESELS PSEKAYLNAV EKGDYASVKK SLEEAEIYFK 60
61 ININCIDPLG RTALLIAIEN ENLELIELLL SFNVYVGDAL LHAIRKEVVG AVELLLNHKK 120
121 PSGEKQVPPI LLDKQFSEFT PDITPIILAA HTNNYEIIKL LVQKGVSVPR PHEVRCNCVE 180
181 CVSSSDVDSL RHSRSRL
|
| Detection Method: |  |
| Confidence: | 29.69897 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| metal ion transmembrane transporter activity | 3.06689459321273 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.89029061890648 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.66479899929908 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.59441577402651 | bayes_pls_golite062009 |
| calcium channel activity | 2.42383730626707 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 2.39688396372487 | bayes_pls_golite062009 |
| channel activity | 2.39688396372487 | bayes_pls_golite062009 |
| cation channel activity | 2.37772481426745 | bayes_pls_golite062009 |
| ion channel activity | 2.36752848265558 | bayes_pls_golite062009 |
| substrate-specific channel activity | 2.26531840012081 | bayes_pls_golite062009 |
| binding | 1.98134935593201 | bayes_pls_golite062009 |
| gated channel activity | 1.75472864911207 | bayes_pls_golite062009 |
| structural constituent of muscle | 1.64895183402675 | bayes_pls_golite062009 |
| protein binding | 1.54890102798695 | bayes_pls_golite062009 |
| molecular transducer activity | 1.50673806965616 | bayes_pls_golite062009 |
| signal transducer activity | 1.50673806965616 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.27626727482972 | bayes_pls_golite062009 |
| transporter activity | 1.19000052859754 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.02570255606772 | bayes_pls_golite062009 |
| receptor activity | 0.872395596733881 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.835937200249181 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.684449236640306 | bayes_pls_golite062009 |
| mechanically-gated ion channel activity | 0.645199153849127 | bayes_pls_golite062009 |
| mechanically gated channel activity | 0.645199153849127 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.360134283189251 | bayes_pls_golite062009 |
|
Region A: Residues: [198-260] |
1 11 21 31 41 51
| | | | | |
1 NIYKALASPS LIALSSEDPF LTAFQLSWEL QELSKVENEF KSEYEELSRQ CKQFAKDLLD 60
61 QTR
|
| Detection Method: | |
| Confidence: | 29.537602 |
| Match: | PF08344.2 |
| Description: | No description for PF08344.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [261-340] |
1 11 21 31 41 51
| | | | | |
1 SSRELEIILN YRDDNSLIEE QSGNDLARLK LAIKYRQKEF VAQPNCQQLL ASRWYDEFPG 60
61 WRRRHWAVKM VTCFIIGLLF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [341-648] |
1 11 21 31 41 51
| | | | | |
1 PVFSVCYLIA PKSPLGLFIR KPFIKFICHT ASYLTFLFLL LLASQHIDRS DLNRQGPPPT 60
61 IVEWMILPWV LGFIWGEIKQ MWDGGLQDYI HDWWNLMDFV MNSLYLATIS LKIVAFVKYS 120
121 ALNPRESWDM WHPTLVAEAL FAIANIFSSL RLISLFTANS HLGPLQISLG RMLLDILKFL 180
181 FIYCLVLLAF ANGLNQLYFY YEETKGLTCK GIRCEKQNNA FSTLFETLQS LFWSIFGLIN 240
241 LYVTNVKAQH EFTEFVGATM FGTYNVISLV VLLNMLIAMM NNSYQLIADH ADIEWKFART 300
301 KLWMSYFE
|
| Detection Method: | |
| Confidence: | 28.69897 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [649-759] |
1 11 21 31 41 51
| | | | | |
1 EGGTLPTPFN VIPSPKSLWY LIKWIWTHLC KKKMRRKPES FGTIGRRAAD NLRRHHQYQE 60
61 VMRNLVKRYV AAMIRDAKTE EGLTEENFKE LKQDISSFRF EVLGLLRGSK L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [760-893] |
1 11 21 31 41 51
| | | | | |
1 STIQSANASK ESSNSADSDE KSDSEEEVAR QQAAGPLERN IQLESRGLAS RGDLSIPGLS 60
61 EQCVLVDHRE RNTDTLGLQV GKRVCPFKSE KVVVEDTVPI IPKEKHAKEE DSSIDYDLNL 120
121 PDTVTHEDYV TTRL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
