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Protein Overview: gi|16517172, gi|...

General Information:
Name(s) found: gi|6665592 [NCBI NR]
gi|55958549 [NCBI NR]
gi|55661660 [NCBI NR]
gi|209863026 [NCBI NR]
gi|16517172 [NCBI NR]
gi|119629005 [NCBI NR]
Description(s) found:
Found 25 descriptions.
SHOW ALL
  • gi|6665592|gb|AAF22928.1|AF063823_1 trp-related protein 4 truncated variant beta [Homo sapiens] [NCBI NR]
  • gi|55958549|emb|CAI15557.1| transient receptor potential cation channel, subfamily C, member 4 [Homo sapiens] [NCBI NR]
  • gi|55661660|emb|CAH70110.1| transient receptor potential cation channel, subfamily C, member 4 [Homo sapiens] [NCBI NR]
  • gi|209863026|ref|NP_001129427.1| transient receptor potential cation channel, subfamily C, member 4 isoform beta [Homo sapiens] [NCBI NR]
  • gi|16517172|gb|AAL24550.1|AF421359_1 transient receptor potential channel 4 beta splice variant [Homo sapiens] [NCBI NR]
  • gi|119629005|gb|EAX08600.1| transient receptor potential cation channel, subfamily C, member 4, isoform CRA_f [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 893 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQFYYKRNV NAPYRDRIPL RIVRAESELS PSEKAYLNAV EKGDYASVKK SLEEAEIYFK  60
   61 ININCIDPLG RTALLIAIEN ENLELIELLL SFNVYVGDAL LHAIRKEVVG AVELLLNHKK 120
  121 PSGEKQVPPI LLDKQFSEFT PDITPIILAA HTNNYEIIKL LVQKGVSVPR PHEVRCNCVE 180
  181 CVSSSDVDSL RHSRSRLNIY KALASPSLIA LSSEDPFLTA FQLSWELQEL SKVENEFKSE 240
  241 YEELSRQCKQ FAKDLLDQTR SSRELEIILN YRDDNSLIEE QSGNDLARLK LAIKYRQKEF 300
  301 VAQPNCQQLL ASRWYDEFPG WRRRHWAVKM VTCFIIGLLF PVFSVCYLIA PKSPLGLFIR 360
  361 KPFIKFICHT ASYLTFLFLL LLASQHIDRS DLNRQGPPPT IVEWMILPWV LGFIWGEIKQ 420
  421 MWDGGLQDYI HDWWNLMDFV MNSLYLATIS LKIVAFVKYS ALNPRESWDM WHPTLVAEAL 480
  481 FAIANIFSSL RLISLFTANS HLGPLQISLG RMLLDILKFL FIYCLVLLAF ANGLNQLYFY 540
  541 YEETKGLTCK GIRCEKQNNA FSTLFETLQS LFWSIFGLIN LYVTNVKAQH EFTEFVGATM 600
  601 FGTYNVISLV VLLNMLIAMM NNSYQLIADH ADIEWKFART KLWMSYFEEG GTLPTPFNVI 660
  661 PSPKSLWYLI KWIWTHLCKK KMRRKPESFG TIGRRAADNL RRHHQYQEVM RNLVKRYVAA 720
  721 MIRDAKTEEG LTEENFKELK QDISSFRFEV LGLLRGSKLS TIQSANASKE SSNSADSDEK 780
  781 SDSEEEVARQ QAAGPLERNI QLESRGLASR GDLSIPGLSE QCVLVDHRER NTDTLGLQVG 840
  841 KRVCPFKSEK VVVEDTVPII PKEKHAKEED SSIDYDLNLP DTVTHEDYVT TRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] PSI-BLAST 29.69897 Ankyrin-R
    2 View Details [198..260] Pfam 29.537602 No description for PF08344.2 was found. No confident structure predictions are available.
    3 View Details [261..340] deduced N/A No confident structure predictions are available.
    4 View Details [341..648] PSI-BLAST 28.69897 Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
    5 View Details [649..759] deduced N/A No confident structure predictions are available.
    6 View Details [760..893] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • metal ion transmembrane transporter activity
    		•  3.06689459321273 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.89029061890648 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  2.66479899929908 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.59441577402651 bayes_pls_golite062009
  • calcium channel activity
    		•  2.42383730626707 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  2.39688396372487 bayes_pls_golite062009
  • channel activity
    		•  2.39688396372487 bayes_pls_golite062009
  • cation channel activity
    		•  2.37772481426745 bayes_pls_golite062009
  • ion channel activity
    		•  2.36752848265558 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  2.26531840012081 bayes_pls_golite062009
  • binding
    		•  1.98134935593201 bayes_pls_golite062009
  • gated channel activity
    		•  1.75472864911207 bayes_pls_golite062009
  • structural constituent of muscle
    		•  1.64895183402675 bayes_pls_golite062009
  • protein binding
    		•  1.54890102798695 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.50673806965616 bayes_pls_golite062009
  • signal transducer activity
    		•  1.50673806965616 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.27626727482972 bayes_pls_golite062009
  • transporter activity
    		•  1.19000052859754 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.02570255606772 bayes_pls_golite062009
  • receptor activity
    		•  0.872395596733881 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.835937200249181 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.684449236640306 bayes_pls_golite062009
  • mechanically-gated ion channel activity
    		•  0.645199153849127 bayes_pls_golite062009
  • mechanically gated channel activity
    		•  0.645199153849127 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.360134283189251 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle