| Protein: | YBX1 |
| Organism: | Homo sapiens |
| Length: | 324 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBX1.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-56 | [4..321] | [1444..1798] |
|
|
2.0E-46 | [5..322] | [2033..2351] |
|
|
5.0E-46 | [5..323] | [2009..2322] |
|
|
1.0E-45 | [1..324] | [57..379] |
|
|
1.0E-41 | [4..321] | [277..592] |
|
|
2.0E-41 | [4..317] | [268..575] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MSSEAETQQP PAAPPAAPAL SAADTKPGTT GSGAGSGGPG GLTSAAPAGG DKKVIATKVL 60
61 GTVKWFNVRN GYGFINRNDT KEDVFVHQTA IKKNNPRKYL RSVGDGETVE FDVVEGEKGA 120
121 EAANVTGP
|
| Detection Method: |  |
| Confidence: | 23.0 |
| Match: | 1h95A |
| Description: | Y-box protein 1 cold shock domain (YB1-CSD) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.29626483284963 | bayes_pls_golite062009 |
| DNA binding | 3.71771169141041 | bayes_pls_golite062009 |
| binding | 2.83465364476231 | bayes_pls_golite062009 |
| RNA binding | 2.41160981373213 | bayes_pls_golite062009 |
| structure-specific DNA binding | 2.36519400829041 | bayes_pls_golite062009 |
| single-stranded DNA binding | 2.17275251213485 | bayes_pls_golite062009 |
| transcription regulator activity | 2.10110937001387 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.9581702424972 | bayes_pls_golite062009 |
| transcription repressor activity | 1.30343463892105 | bayes_pls_golite062009 |
| transcription activator activity | 1.24141936405635 | bayes_pls_golite062009 |
| protein binding | 1.20309946451799 | bayes_pls_golite062009 |
| transcription factor activity | 1.14242112812892 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.04824459597896 | bayes_pls_golite062009 |
| 0.966603287421221 | bayes_pls_golite062009 | |
| ribonuclease activity | 0.702449673647117 | bayes_pls_golite062009 |
| structural molecule activity | 0.701736942766518 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.583085644017496 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.449277083957511 | bayes_pls_golite062009 |
| mRNA binding | 0.4162128308402 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.40223812695012 | bayes_pls_golite062009 |
| translation regulator activity | 0.31332179848255 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.263197317040851 | bayes_pls_golite062009 |
| chromatin binding | 0.19409870825073 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.13299060447839 | bayes_pls_golite062009 |
| nuclease activity | 0.111225677144242 | bayes_pls_golite062009 |
|
Region A: Residues: [129-324] |
1 11 21 31 41 51
| | | | | |
1 GGVPVQGSKY AADRNHYRRY PRRRGPPRNY QQNYQNSESG EKNEGSESAP EGQAQQRRPY 60
61 RRRRFPPYYM RRPYGRRPQY SNPPVQGEVM EGADNQGAGE QGRPVRQNMY RGYRPRFRRG 120
121 PPRQRQPRED GNEEDKENQG DETQGQQPPQ RRYRRNFNYR RRRPENPKPQ DGKETKAADP 180
181 PAENSSAPEA EQGGAE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
