| Protein: | SF3A3 |
| Organism: | Homo sapiens |
| Length: | 501 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SF3A3.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..501] | [1..501] |
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0.0 | [1..501] | [1..501] |
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0.0 | [1..501] | [1..501] |
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0.0 | [1..501] | [1..501] |
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0.0 | [1..501] | [1..501] |
|
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0.0 | [1..501] | [1..501] |
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0.0 | [1..501] | [1..501] |
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0.0 | [1..501] | [1..501] |
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Region A: Residues: [1-219] |
1 11 21 31 41 51
| | | | | |
1 METILEQQRR YHEEKERLMD VMAKEMLTKK STLRDQINSD HRTRAMQDRY MEVSGNLRDL 60
61 YDDKDGLRKE ELNAISGPNE FAEFYNRLKQ IKEFHRKHPN EICVPMSVEF EELLKARENP 120
121 SEEAQNLVEF TDEEGYGRYL DLHDCYLKYI NLKASEKLDY ITYLSIFDQL FDIPKERKNA 180
181 EYKRYLEMLL EYLQDYTDRV KPLQDQNELF GKIQAEFEK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [220-294] |
1 11 21 31 41 51
| | | | | |
1 KWENGTFPGW PKETSSALTH AGAHLDLSAF SSWEELASLG LDRLKSALLA LGLKCGGTLE 60
61 ERAQRLFSTK GKSLE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.697 | 0.080 | nuclear mRNA splicing, via spliceosome | a.65.1 | Annexin |
| View | Download | 0.477 | 0.039 | nuclear mRNA splicing, via spliceosome | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.500 | 0.025 | nuclear mRNA splicing, via spliceosome | a.64.1 | Saposin |
| View | Download | 0.430 | 0.007 | nuclear mRNA splicing, via spliceosome | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.559 | N/A | N/A | a.65.1 | Annexin |
|
Region A: Residues: [295-376] |
1 11 21 31 41 51
| | | | | |
1 SLDTSLFAKN PKSKGTKRDT ERNKDIAFLE AQIYEYVEIL GEQRHLTHEN VQRKQARTGE 60
61 EREEEEEEQI SESESEDEEN EI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [377-501] |
1 11 21 31 41 51
| | | | | |
1 IYNPKNLPLG WDGKPIPYWL YKLHGLNINY NCEICGNYTY RGPKAFQRHF AEWRHAHGMR 60
61 CLGIPNTAHF ANVTQIEDAV SLWAKLKLQK ASERWQPDTE EEYEDSSGNV VNKKTYEDLK 120
121 RQGLL
|
| Detection Method: | |
| Confidence: | 1.05 |
| Match: | 1zr9A |
| Description: | Solution Structure of a Human C2H2-type Zinc Finger Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
| DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
| nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
| snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
| RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
| binding | 2.99742524370422 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
| transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
| mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
| transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
| protein binding | 0.952480850696098 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
| transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
| chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
| transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.380243728411498 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
| tubulin binding | 0.151955152284472 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
| microtubule binding | 0.05082413668213 | bayes_pls_golite062009 |
