| Protein: | GDB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1536 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1536] | [1..1536] |
|
|
0.0 | [52..1528] | [36..1532] |
|
|
0.0 | [53..1534] | [44..1544] |
|
|
0.0 | [52..1528] | [59..1555] |
|
|
0.0 | [2..1527] | [9..1514] |
|
|
0.0 | [52..1528] | [19..1515] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MNRSLLLRLS DTGEPITSCS YGKGVLTLPP IPLPKDAPKD QPLYTVKLLV SAGSPVARDG 60
61 LVWTNCPPDH NTPFKRDKFY KKIIHSSFHE DDCIDLNVYA PGSYCFYLSF
|
| Detection Method: |  |
| Confidence: | 87.522879 |
| Match: | 1j0hA_ |
| Description: | Neopullulanase, central domain; Neopullulanase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity, hydrolyzing O-glycosyl compounds | 4.55801959095491 | bayes_pls_golite062009 |
| hydrolase activity, acting on glycosyl bonds | 4.29108420555514 | bayes_pls_golite062009 |
| hydrolase activity | 3.3484406095165 | bayes_pls_golite062009 |
| glucosidase activity | 1.92306554001182 | bayes_pls_golite062009 |
| catalytic activity | 1.85569074294201 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.69105818607475 | bayes_pls_golite062009 |
| alpha-amylase activity | 1.42264105957213 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 1.39709424453076 | bayes_pls_golite062009 |
| amylase activity | 1.37652764526134 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 1.05409109078129 | bayes_pls_golite062009 |
| ligand-gated channel activity | 1.05409109078129 | bayes_pls_golite062009 |
| cation channel activity | 1.05200514582216 | bayes_pls_golite062009 |
| gated channel activity | 0.9985637228196 | bayes_pls_golite062009 |
| phosphorylase activity | 0.99159540154441 | bayes_pls_golite062009 |
| ion channel activity | 0.90214915215542 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.88505980389015 | bayes_pls_golite062009 |
| hexosaminidase activity | 0.763360027922833 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.7468694373149 | bayes_pls_golite062009 |
| channel activity | 0.72022399139884 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.72022399139884 | bayes_pls_golite062009 |
| carbohydrate binding | 0.66542913126194 | bayes_pls_golite062009 |
| binding | 0.63693798355947 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 0.607543065522144 | bayes_pls_golite062009 |
| sugar binding | 0.52048704356718 | bayes_pls_golite062009 |
| alpha-glucosidase activity | 0.502835520523619 | bayes_pls_golite062009 |
| chitinase activity | 0.500233744020165 | bayes_pls_golite062009 |
| voltage-gated channel activity | 0.469037239588056 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 0.432338683948607 | bayes_pls_golite062009 |
| transferase activity, transferring hexosyl groups | 0.266938437560648 | bayes_pls_golite062009 |
| beta-N-acetylhexosaminidase activity | 0.263065978664289 | bayes_pls_golite062009 |
|
Region A: Residues: [111-444] |
1 11 21 31 41 51
| | | | | |
1 RNDNEKLETT RKYYFVALPM LYINDQFLPL NSIALQSVVS KWLGSDWEPI LSKIAAKNYN 60
61 MVHFTPLQER GESNSPYSIY DQLQFDQEHF KSPEDVKNLV EHIHRDLNML SLTDIVFNHT 120
121 ANNSPWLVEH PEAGYNHITA PHLISAIELD QELLNFSRNL KSWGYPTELK NIEDLFKIMD 180
181 GIKVHVLGSL KLWEYYAVNV QTALRDIKAH WNDESNESYS FPENIKDISS DFVKLASFVK 240
241 DNVTEPNFGT LGERNSNRIN VPKFIQLLKL INDGGSDDSE SSLATAQNIL NEVNLPLYRE 300
301 YDDDVSEILE QLFNRIKYLR LDDGGPKQGP VTVD
|
| Detection Method: | |
| Confidence: | 87.522879 |
| Match: | 1j0hA_ |
| Description: | Neopullulanase, central domain; Neopullulanase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [445-539] |
1 11 21 31 41 51
| | | | | |
1 VPLTEPYFTR FKGKDGTDYA LANNGWIWNG NPLVDFASQN SRAYLRREVI VWGDCVKLRY 60
61 GKSPEDSPYL WERMSKYIEM NAKIFDGFRI DNCHS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.575 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.484 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.510 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.462 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.472 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.454 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.452 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.431 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.425 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.425 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.376 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.372 | a.130.1 | Chorismate mutase II |
| View | Download | 0.370 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.361 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.351 | d.58.49 | YajQ-like |
| View | Download | 0.350 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.314 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.311 | d.101.1 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
| View | Download | 0.310 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.302 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.294 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.278 | d.110.4 | SNARE-like |
| View | Download | 0.273 | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.269 | a.29.2 | Bromodomain |
| View | Download | 0.261 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.258 | c.47.1 | Thioredoxin-like |
| View | Download | 0.222 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.218 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.212 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.211 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.211 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.208 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.201 | d.58.17 | Metal-binding domain |
| Term | Confidence | Notes |
| hydrolase activity, hydrolyzing O-glycosyl compounds | 4.01411696184454 | bayes_pls_golite062009 |
| hydrolase activity, acting on glycosyl bonds | 3.75569329586306 | bayes_pls_golite062009 |
| hydrolase activity | 3.09437610147873 | bayes_pls_golite062009 |
| catalytic activity | 1.71182498300466 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.47858966054862 | bayes_pls_golite062009 |
| glucosidase activity | 1.43091142767978 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 1.20132615047656 | bayes_pls_golite062009 |
| alpha-amylase activity | 0.941347702703202 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.903068069820964 | bayes_pls_golite062009 |
| amylase activity | 0.891520642245226 | bayes_pls_golite062009 |
| phosphorylase activity | 0.800923094114415 | bayes_pls_golite062009 |
| binding | 0.714691332987919 | bayes_pls_golite062009 |
| cation channel activity | 0.687664373378757 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.644476237009351 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.644476237009351 | bayes_pls_golite062009 |
| gated channel activity | 0.639690382658596 | bayes_pls_golite062009 |
| ion channel activity | 0.554120053171305 | bayes_pls_golite062009 |
| carbohydrate binding | 0.504948074246922 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.41159587344266 | bayes_pls_golite062009 |
| channel activity | 0.389778821252571 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.389778821252571 | bayes_pls_golite062009 |
| sugar binding | 0.358568008635262 | bayes_pls_golite062009 |
| hexosaminidase activity | 0.276754066333854 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 0.161734714032652 | bayes_pls_golite062009 |
| chitinase activity | 0.0470563383739831 | bayes_pls_golite062009 |
| transferase activity, transferring hexosyl groups | 0.0442793643840943 | bayes_pls_golite062009 |
| voltage-gated channel activity | 0.0360180230561171 | bayes_pls_golite062009 |
| alpha-glucosidase activity | 0.0243149684125608 | bayes_pls_golite062009 |
|
Region A: Residues: [540-812] |
1 11 21 31 41 51
| | | | | |
1 TPIHVGEYFL DLARKYNPNL YVVAELFSGS ETLDCLFVER LGISSLIREA MQAWSEEELS 60
61 RLVHKHGGRP IGSYKFVPMD DFSYPADINL NEEHCFNDSN DNSIRCVSEI MIPKILTATP 120
121 PHALFMDCTH DNETPFEKRT VEDTLPNAAL VALCSSAIGS VYGYDEIFPH LLNLVTEKRH 180
181 YDISTPTGSP SIGITKVKAT LNSIRTSIGE KAYDIEDSEM HVHHQGQYIT FHRMDVKSGK 240
241 GWYLIARMKF SDNDDPNETL PPVVLNQSTC SLR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [813-927] |
1 11 21 31 41 51
| | | | | |
1 FSYALERVGD EIPNDDKFIK GIPTKLKELE GFDISYDDSK KISTIKLPNE FPQGSIAIFE 60
61 TQQNGVDESL DHFIRSGALK ATSSLTLESI NSVLYRSEPE EYDVSAGEGG AYIIP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.408 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.440 | b.1.18 | E set domains |
| View | Download | 0.567 | d.82.2 | Frataxin-like |
| View | Download | 0.481 | b.3.3 | VHL |
| View | Download | 0.354 | a.1.1 | Globin-like |
| View | Download | 0.279 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.278 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.264 | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.250 | d.110.4 | SNARE-like |
| View | Download | 0.213 | a.74.1 | Cyclin-like |
| Term | Confidence | Notes |
| hydrolase activity, hydrolyzing O-glycosyl compounds | 3.49882811932206 | bayes_pls_golite062009 |
| hydrolase activity, acting on glycosyl bonds | 3.13521240810366 | bayes_pls_golite062009 |
| hydrolase activity | 2.32639760387397 | bayes_pls_golite062009 |
| trehalase activity | 1.57673904073206 | bayes_pls_golite062009 |
| catalytic activity | 1.16285856935495 | bayes_pls_golite062009 |
| binding | 1.09827656713171 | bayes_pls_golite062009 |
| alpha,alpha-trehalase activity | 0.711518852337884 | bayes_pls_golite062009 |
| phosphorylase activity | 0.60780059000187 | bayes_pls_golite062009 |
| protein binding | 0.31260719357226 | bayes_pls_golite062009 |
| intramolecular oxidoreductase activity | 0.0683547784833305 | bayes_pls_golite062009 |
|
Region A: Residues: [928-1536] |
1 11 21 31 41 51
| | | | | |
1 NFGKPVYCGL QGWVSVLRKI VFYNDLAHPL SANLRNGHWA LDYTISRLNY YSDEAGINEV 60
61 QNWLRSRFDR VKKLPSYLVP SYFALIIGIL YGCCRLKAIQ LMSRNIGKST LFVQSLSMTS 120
121 IQMVSRMKST SILPGENVPS MAAGLPHFSV NYMRCWGRDV FISLRGMLLT TGRFDEAKAH 180
181 ILAFAKTLKH GLIPNLLDAG RNPRYNARDA AWFFLQAVQD YVYIVPDGEK ILQEQVTRRF 240
241 PLDDTYIPVD DPRAFSYSST LEEIIYEILS RHAKGIKFRE ANAGPNLDRV MTDKGFNVEI 300
301 HVDWSTGLIH GGSQYNCGTW MDKMGESEKA GSVGIPGTPR DGAAIEINGL LKSALRFVIE 360
361 LKNKGLFKFS DVETQDGGRI DFTEWNQLLQ DNFEKRYYVP EDPSQDADYD VSAKLGVNRR 420
421 GIYRDLYKSG KPYEDYQLRP NFAIAMTVAP ELFVPEHAIK AITIADEVLR GPVGMRTLDP 480
481 SDYNYRPYYN NGEDSDDFAT SKGRNYHQGP EWVWLYGYFL RAFHHFHFKT SPRCQNAAKE 540
541 KPSSYLYQQL YYRLKGHRKW IFESVWAGLT ELTNKDGEVC NDSSPTQAWS SACLLDLFYD 600
601 LWDAYEDDS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
