| Protein: | PRP4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 465 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [10..465] | [1218..1662] |
|
|
0.0 | [10..465] | [1036..1480] |
|
|
0.0 | [25..465] | [818..1247] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MSKYIALENL PVDLQHKGAT QNESTADILK QLPHERLQAV LEKIPEEDLE VRRLLSILKK 60
61 PEVVENEDVQ QRRIRLAEIL MVDEIDLENI NNMENINGEE VDEEDDEDFF TPATSELIFA 120
121 RRFLIN
|
| Detection Method: |  |
| Confidence: | 5.0 |
| Match: | 1l0qA_ |
| Description: | Surface layer protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [127-465] |
1 11 21 31 41 51
| | | | | |
1 YSLERSRKRL QKEMERHQKF NTRQELLSRR TELQRMANLE LAGSQLVSTK PISAVSLSTD 60
61 DMVVATGSWA GDLQVLNSQT LQPLTQKLDS HVGKIGAIDW HPDSNNQMIS CAEDGLIKNF 120
121 QYSNEEGGLR LLGDLVGHER RISDVKYHPS GKFIGSASHD MTWRLWDAST HQELLLQEGH 180
181 DKGVFSLSFQ CDGSLVCSGG MDSLSMLWDI RSGSKVMTLA GHSKPIYTVA WSPNGYQVAT 240
241 GGGDGIINVW DIRKRDEGQL NQILAHRNIV TQVRFSKEDG GKKLVSCGYD NLINVYSSDT 300
301 WLKMGSLAGH TDKIISLDIS NNSHFLVSGG WDRSIKLWN
|
| Detection Method: | |
| Confidence: | 339.450636 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 6.67009948605948 | bayes_pls_golite062009 | |
| histone methyltransferase activity (H3-K4 specific) | 4.71992275913384 | bayes_pls_golite062009 |
| GTPase activity | 4.02994814377904 | bayes_pls_golite062009 |
| actin binding | 3.86142918698875 | bayes_pls_golite062009 |
| RNA binding | 3.77273677738815 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 3.25521258308263 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| snoRNA binding | 2.27164613239345 | bayes_pls_golite062009 |
| dynactin binding | 2.07556426531897 | bayes_pls_golite062009 |
| actin filament binding | 2.0735069176589 | bayes_pls_golite062009 |
| histone methyltransferase activity | 1.85632145559025 | bayes_pls_golite062009 |
| structural molecule activity | 1.47097979074281 | bayes_pls_golite062009 |
| protein methyltransferase activity | 1.35170368882651 | bayes_pls_golite062009 |
| transcription regulator activity | 1.25687092973217 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.22384651674093 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| nucleic acid binding | 1.20712373307552 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| receptor activity | 1.12819778129653 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 1.11754260203517 | bayes_pls_golite062009 |
| mRNA binding | 1.05053985350578 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| myosin binding | 0.989691178611801 | bayes_pls_golite062009 |
| molecular transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| signal transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| type 1 angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| DNA binding | 0.711274653406079 | bayes_pls_golite062009 |
| transcription repressor activity | 0.702111212042669 | bayes_pls_golite062009 |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.426429095658617 | bayes_pls_golite062009 |
| kinase activity | 0.387572734234845 | bayes_pls_golite062009 |
| receptor binding | 0.316169754698691 | bayes_pls_golite062009 |
| transcription factor activity | 0.243992994917491 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 0.231534552000461 | bayes_pls_golite062009 |
| protein kinase activity | 0.229242350006544 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226335610368636 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.161639372576406 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.157016319695991 | bayes_pls_golite062009 |
| chromatin binding | 0.145491963066342 | bayes_pls_golite062009 |
| myosin II binding | 0.12060669039328 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
| N-methyltransferase activity | 0.00335766408304172 | bayes_pls_golite062009 |
