| Protein: | BMS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1183 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BMS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1183] | [1..1183] |
|
|
0.0 | [2..1182] | [5..1120] |
|
|
0.0 | [3..1182] | [5..1160] |
|
|
0.0 | [1..1169] | [20..1159] |
|
|
0.0 | [4..1174] | [9..1145] |
|
|
0.0 | [4..1174] | [9..1136] |
|
|
0.0 | [338..1178] | [93..934] |
|
|
0.0 | [2..1164] | [5..1211] |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MEQSNKQHRK AKEKNTAKKK LHTQGHNAKA FAVAAPGKMA RTMQRSSDVN ERKLHVPMVD 60
61 RTPEDDPPPF IVAVVGPPGT GKTTLIRSLV RRMTKSTLND IQGPITVVSG KHRRLTFLEC 120
121 PADDLNAMID IAKIADLVLL LIDGNFGFEM ETMEFLNIAQ HHGMPRVLGV ATHL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.43368780168847 | bayes_pls_golite062009 |
| motor activity | 1.66001460462062 | bayes_pls_golite062009 |
| RNA binding | 1.64085862208961 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.58614825683861 | bayes_pls_golite062009 |
| microtubule motor activity | 1.51492936494661 | bayes_pls_golite062009 |
| 1.40793830270505 | bayes_pls_golite062009 | |
| nucleic acid binding | 1.38653949159874 | bayes_pls_golite062009 |
| RNA helicase activity | 1.19425264627559 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.16223608981327 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.13639104386803 | bayes_pls_golite062009 |
| DNA binding | 1.10928092522596 | bayes_pls_golite062009 |
| transcription regulator activity | 1.02050154675732 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.01452238670999 | bayes_pls_golite062009 |
| catalytic activity | 0.942640875796745 | bayes_pls_golite062009 |
| structural molecule activity | 0.675553718290749 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.661839640945953 | bayes_pls_golite062009 |
| hydrolase activity | 0.59573424609875 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 0.561205936947495 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 0.561205936947495 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 0.560259345938113 | bayes_pls_golite062009 |
| tubulin binding | 0.486290099514671 | bayes_pls_golite062009 |
| protein binding | 0.409258528033042 | bayes_pls_golite062009 |
| helicase activity | 0.389068221426991 | bayes_pls_golite062009 |
| microtubule binding | 0.379674198622762 | bayes_pls_golite062009 |
| actin binding | 0.332654682400232 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.191068703418711 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.188196054823553 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.184212465168396 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147137984163853 | bayes_pls_golite062009 |
| transcription factor activity | 0.0836981407579493 | bayes_pls_golite062009 |
| microfilament motor activity | 0.0684601046679916 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.0655945570748848 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.0655945570748848 | bayes_pls_golite062009 |
|
Region A: Residues: [175-329] |
1 11 21 31 41 51
| | | | | |
1 DLFKSQSTLR ASKKRLKHRF WTEVYQGAKL FYLSGVINGR YPDREILNLS RFISVMKFRP 60
61 LKWRNEHPYM LADRFTDLTH PELIETQGLQ IDRKVAIYGY LHGTPLPSAP GTRVHIAGVG 120
121 DFSVAQIEKL PDPCPTPFYQ QKLDDFEREK MKEEA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [330-693] |
1 11 21 31 41 51
| | | | | |
1 KANGEITTAS TTRRRKRLDD KDKLIYAPMS DVGGVLMDKD AVYIDIGKKN EEPSFVPGQE 60
61 RGEGEKLMTG LQSVEQSIAE KFDGVGLQLF SNGTELHEVA DHEGMDVESG EESIEDDEGK 120
121 SKGRTSLRKP RIYGKPVQEE DADIDNLPSD EEPYTNDDDV QDSEPRMVEI DFNNTGEQGA 180
181 EKLALETDSE FEESEDEFSW ERTAANKLKK TESKKRTWNI GKLIYMDNIS PEECIRRWRG 240
241 EDDDSKDESD IEEDVDDDFF RKKDGTVTKE GNKDHAVDLE KFVPYFDTFE KLAKKWKSVD 300
301 AIKERFLGAG ILGNDNKTKS DSNEGGEELY GDFEDLEDGN PSEQAEDNSD KESEDEDENE 360
361 DTNG
|
| Detection Method: | |
| Confidence: | 2.221849 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [694-982] |
1 11 21 31 41 51
| | | | | |
1 DDDNSFTNFD AEEKKDLTME QEREMNAAKK EKLRAQFEIE EGENFKEDDE NNEYDTWYEL 60
61 QKAKISKQLE INNIEYQEMT PEQRQRIEGF KAGSYVRIVF EKVPMEFVKN FNPKFPIVMG 120
121 GLLPTEIKFG IVKARLRRHR WHKKILKTND PLVLSLGWRR FQTLPIYTTT DSRTRTRMLK 180
181 YTPEHTYCNA AFYGPLCSPN TPFCGVQIVA NSDTGNGFRI AATGIVEEID VNIEIVKKLK 240
241 LVGFPYKIFK NTAFIKDMFS SAMEVARFEG AQIKTVSGIR GEIKRALSK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [983-1096] |
1 11 21 31 41 51
| | | | | |
1 PEGHYRAAFE DKILMSDIVI LRSWYPVRVK KFYNPVTSLL LKEKTEWKGL RLTGQIRAAM 60
61 NLETPSNPDS AYHKIERVER HFNGLKVPKA VQKELPFKSQ IHQMKPQKKK TYMA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.495 | 0.430 | ribosome assembly | a.1.1 | Globin-like |
| View | Download | 0.499 | 0.086 | ribosome assembly | a.118.8 | TPR-like |
| View | Download | 0.414 | 0.041 | ribosome assembly | d.95.2 | Homing endonucleases |
| View | Download | 0.379 | N/A | N/A | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.347 | N/A | N/A | d.206.1 | YggU-like |
| View | Download | 0.337 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.305 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.290 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.264 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.261 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.244 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.237 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.237 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.236 | N/A | N/A | d.74.4 | Prokaryotic AspRS, insert domain |
| View | Download | 0.235 | N/A | N/A | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.230 | N/A | N/A | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.227 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.220 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.219 | N/A | N/A | c.45.1 | (Phosphotyrosine protein) phosphatases II |
|
Region A: Residues: [1097-1183] |
1 11 21 31 41 51
| | | | | |
1 KRAVVLGGDE KKARSFIQKV LTISKAKDSK RKEQKASQRK ERLKKLAKME EEKSQRDKEK 60
61 KKEYFAQNGK RTTMGGDDES RPRKMRR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.796 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.714 | a.47.2 | t-snare proteins |
| View | Download | 0.469 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.711 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.544 | a.46.1 | Methionine synthase domain |
| View | Download | 0.462 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.452 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.447 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.400 | a.112.1 | Description not found. |
| View | Download | 0.398 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.389 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.369 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.346 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.340 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.332 | a.24.3 | Cytochromes |
| View | Download | 0.331 | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.328 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.325 | g.2.2 | Neurotoxin B-IV |
| View | Download | 0.322 | a.64.1 | Saposin |
| View | Download | 0.321 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.317 | a.7.7 | BAG domain |
| View | Download | 0.308 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.307 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.306 | a.7.8 | GAT domain |
| View | Download | 0.303 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.302 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.301 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.288 | a.2.3 | Chaperone J-domain |
| View | Download | 0.288 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.278 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.278 | d.95.2 | Homing endonucleases |
| View | Download | 0.273 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.265 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.259 | a.22.1 | Histone-fold |
| View | Download | 0.257 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.254 | a.25.1 | Ferritin-like |
| View | Download | 0.254 | a.17.1 | p8-MTCP1 |
| View | Download | 0.252 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.250 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.249 | a.126.1 | Serum albumin-like |
| View | Download | 0.240 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.238 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.232 | a.47.2 | t-snare proteins |
| View | Download | 0.230 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.229 | a.59.1 | PAH2 domain |
| View | Download | 0.228 | a.2.5 | Prefoldin |
| View | Download | 0.228 | a.2.7 | tRNA-binding arm |
| View | Download | 0.227 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.211 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.210 | a.24.4 | Hemerythrin |
| View | Download | 0.205 | a.39.1 | EF-hand |
| View | Download | 0.205 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.201 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
