| Protein: | TRE1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 783 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRE1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..783] | [1..783] |
|
|
0.0 | [31..781] | [20..797] |
|
|
0.0 | [31..781] | [20..800] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MVNTRGYTTL PNVEEPANNS QDELNSQDFE QAIGMPSEPP VYVEEMGMEE PQAPEAFSEK 60
61 VQRFRMCFEN NVVIPVKKNV VDPLAQMISL ASEKFDLFLS KIGNVMVMRR IFYIMMMSII 120
121 AALIIASDRL PNGKAR
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [137-209] |
1 11 21 31 41 51
| | | | | |
1 GSNGSFSDHD LLLQYARKSI DLSKIERDLE YISSMPHMSG TSGDAAIRHY IKESFDKNGI 60
61 RLAGEEEFMA YSN
|
|
Region B: Residues: [322-348] |
1 11 21 31 41 51
| | | | | |
1 QYGTGDALTP EWEGSIRDPI DATEAKC
|
|
Region C: Residues: [398-619] |
1 11 21 31 41 51
| | | | | |
1 IRERHPVHDI VGKIEGSEQA GRAIVIAAPR NSASYGTMYP SFGTVVLLSL IQLYQEMVYK 60
61 FDWKPLRNIY FISFGGSEFN EAGATELMEK RTEALKSEIY TIIDVGQIGI WDDSNNLEIQ 120
121 CHPLLVDLFQ KNMTSRKFNV KVDNVHQFGD WTPYLAQGIP VAIISSPGVM NREHPIYTVE 180
181 DKFDFIKDKL RDKKKGEVLS EIMLYLVEKS LELIDDPFIP FS
|
| Detection Method: | |
| Confidence: | 277.54902 |
| Match: | 1de4C_ |
| Description: | Transferrin receptor ectodomain, C-terminal domain; Transferrin receptor ectodomain, apical domain; Transferrin receptor ectodomain, protease-like domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 3.26568153906254 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 2.98334117181651 | bayes_pls_golite062009 |
| hydrolase activity | 2.9250662598192 | bayes_pls_golite062009 |
| transmembrane receptor activity | 2.06300314555202 | bayes_pls_golite062009 |
| signal transducer activity | 1.98411113807388 | bayes_pls_golite062009 |
| molecular transducer activity | 1.98411113807388 | bayes_pls_golite062009 |
| receptor activity | 1.93707013781136 | bayes_pls_golite062009 |
| metallopeptidase activity | 1.75261723003176 | bayes_pls_golite062009 |
| exopeptidase activity | 1.5759162922092 | bayes_pls_golite062009 |
| catalytic activity | 1.3989281287879 | bayes_pls_golite062009 |
| transferrin receptor activity | 1.08060244646522 | bayes_pls_golite062009 |
| carboxypeptidase activity | 0.891655769761122 | bayes_pls_golite062009 |
| binding | 0.700980045216992 | bayes_pls_golite062009 |
| metalloexopeptidase activity | 0.472688733072762 | bayes_pls_golite062009 |
| metallocarboxypeptidase activity | 0.180859448845431 | bayes_pls_golite062009 |
| aminopeptidase activity | 0.0966237570696103 | bayes_pls_golite062009 |
|
Region A: Residues: [210-321] |
1 11 21 31 41 51
| | | | | |
1 YPGNVSLRVY SKDDTEGFDI PLNEENFNPM SHNGQLNNIP VIYANKASLD DMASMQDQGL 60
61 LNGDFILLVH YGDYVFQQML TAQEYGAKAI IFISEPYQDN KDVIQMKSVA LP
|
|
Region B: Residues: [349-397] |
1 11 21 31 41 51
| | | | | |
1 LPKIPSIPIS ANQGDKILAI LSDTGVKFSN NLFSGSLNDC RLDLLVQTA
|
|
Region C: Residues: [620-783] |
1 11 21 31 41 51
| | | | | |
1 ISNYVDFLST TLKDLQKECP DTVNFDEVFL GTTLWENTKL QFEKWKSEWT ELMYGAGTYI 60
61 EPTIIAINRW SWNYLLSLIG VTQCLEEGLM DRTFYKNVIF GPKLWVDKGD PLRSWTFPEI 120
121 RDTIAIKDWS SVQVQANTLG TILQNTARYF LENKNLHGIN TNEF
|
| Detection Method: | |
| Confidence: | 277.54902 |
| Match: | 1de4C_ |
| Description: | Transferrin receptor ectodomain, C-terminal domain; Transferrin receptor ectodomain, apical domain; Transferrin receptor ectodomain, protease-like domain |
| Matching Structure (courtesy of the PDB): |
|
