| Protein: | RAD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1100 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1100] | [1..1100] |
|
|
0.0 | [84..1076] | [7..914] |
|
|
0.0 | [86..1066] | [9..904] |
|
|
0.0 | [83..1066] | [6..907] |
|
|
0.0 | [91..1061] | [4..874] |
|
Region A: Residues: [1-299] |
1 11 21 31 41 51
| | | | | |
1 MSQLFYQGDS DDELQEELTR QTTQASQSSK IKNEDEPDDS NHLNEVENED SKVLDDDAVL 60
61 YPLIPNEPDD IETSKPNIND IRPVDIQLTL PLPFQQKVVE NSLITEDALI IMGKGLGLLD 120
121 IVANLLHVLA TPTSINGQLK RALVLVLNAK PIDNVRIKEA LEELSWFSNT GKDDDDTAVE 180
181 SDDELFERPF NVVTADSLSI EKRRKLYISG GILSITSRIL IVDLLSGIVH PNRVTGMLVL 240
241 NADSLRHNSN ESFILEIYRS KNTWGFIKAF SEAPETFVME FSPLRTKMKE LRLKNVLLW
|
| Detection Method: |  |
| Confidence: | 12.522879 |
| Match: | 1qdeA_ |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [300-585] |
1 11 21 31 41 51
| | | | | |
1 PRFRVEVSSC LNATNKTSHN KVIEVKVSLT NSMSQIQFGL MECLKKCIAE LSRKNPELAL 60
61 DWWNMENVLD INFIRSIDSV MVPNWHRISY ESKQLVKDIR FLRHLLKMLV TSDAVDFFGE 120
121 IQLSLDANKP SVSRKYSESP WLLVDEAQLV ISYAKKRIFY KNEYTLEENP KWEQLIHILH 180
181 DISHERMTNH LQGPTLVACS DNLTCLELAK VLNASNKKRG VRQVLLNKLK WYRKQREETK 240
241 KLVKEVQSQD TFPENATLNV SSTFSKEQVT TKRRRTRGAS QVAAVE
|
| Detection Method: | |
| Confidence: | 3.0 |
| Match: | 1gm5A_ |
| Description: | RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [586-742] |
1 11 21 31 41 51
| | | | | |
1 KLRNAGTNVD MEVVFEDHKL SEEIKKGSGD DLDDGQEENA ANDSKIFEIQ EQENEILIDD 60
61 GDAEFDNGEL EYVGDLPQHI TTHFNKDLWA EHCNEYEYVD RQDEILISTF KSLNDNCSLQ 120
121 EMMPSYIIMF EPDISFIRQI EVYKAIVKDL QPKVYFM
|
| Detection Method: | |
| Confidence: | 3.0 |
| Match: | 1gm5A_ |
| Description: | RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [743-819] |
1 11 21 31 41 51
| | | | | |
1 YYGESIEEQS HLTAIKREKD AFTKLIRENA NLSHHFETNE DLSHYKNLAE RKLKLSKLRK 60
61 SNTRNAGGQQ GFHNLTQ
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 1d9xA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| single-stranded DNA specific endodeoxyribonuclease activity | 12.5797089932289 | bayes_pls_golite062009 |
| endodeoxyribonuclease activity | 7.65460057398582 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 6.8949486660401 | bayes_pls_golite062009 |
| endonuclease activity | 6.81743235298471 | bayes_pls_golite062009 |
| four-way junction helicase activity | 4.48421726286311 | bayes_pls_golite062009 |
| DNA helicase activity | 4.45575761476577 | bayes_pls_golite062009 |
| DNA strand annealing activity | 3.51692202399009 | bayes_pls_golite062009 |
| excinuclease ABC activity | 3.48615352002265 | bayes_pls_golite062009 |
| single-stranded DNA binding | 3.44605832131927 | bayes_pls_golite062009 |
| structure-specific DNA binding | 3.37084035853131 | bayes_pls_golite062009 |
| damaged DNA binding | 2.98078816242626 | bayes_pls_golite062009 |
| DNA binding | 2.97855002479178 | bayes_pls_golite062009 |
| helicase activity | 2.83648239124034 | bayes_pls_golite062009 |
| nucleic acid binding | 2.79236389919005 | bayes_pls_golite062009 |
| nuclease activity | 2.20113675721212 | bayes_pls_golite062009 |
| binding | 2.17324322139334 | bayes_pls_golite062009 |
| hydrolase activity | 2.07039693890326 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.69645042781713 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.26255690081743 | bayes_pls_golite062009 |
| transposase activity | 1.10140160488189 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 1.05548921907953 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.02983374615445 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.01049916010827 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.00920723797259 | bayes_pls_golite062009 |
| catalytic activity | 0.816447099398022 | bayes_pls_golite062009 |
| protein binding | 0.71091195096997 | bayes_pls_golite062009 |
|
Region A: Residues: [820-989] |
1 11 21 31 41 51
| | | | | |
1 DVVIVDTREF NASLPGLLYR YGIRVIPCML TVGDYVITPD ICLERKSISD LIGSLQNNRL 60
61 ANQCKKMLKY YAYPTLLIEF DEGQSFSLEP FSERRNYKNK DISTVHPISS KLSQDEIQLK 120
121 LAKLVLRFPT LKIIWSSSPL QTVNIILELK LGREQPDPSN AVILGTNKVR
|
| Detection Method: | |
| Confidence: | 113.28043 |
| Match: | 1j22A_ |
| Description: | Putative ATP-dependent RNA helicase Hef, nuclease domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [990-1100] |
1 11 21 31 41 51
| | | | | |
1 SDFNSTAKGL KDGDNESKFK RLLNVPGVSK IDYFNLRKKI KSFNKLQKLS WNEINELIND 60
61 EDLTDRIYYF LRTEKEEQEQ ESTDENLESP GKTTDDNALH DHHNDVPEAP V
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.512 | N/A | N/A | a.60.2 | RuvA domain 2-like |
| View | Download | 0.411 | N/A | N/A | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.381 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.349 | N/A | N/A | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.326 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.307 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.307 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.264 | N/A | N/A | a.60.7 | 5' to 3' exonuclease, C-terminal subdomain |
| View | Download | 0.262 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.261 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.261 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.256 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.253 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.252 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.233 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.230 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.229 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.228 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.219 | N/A | N/A | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.215 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.209 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.205 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
