| Protein: | PHR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 565 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..565] | [1..565] |
|
|
0.0 | [2..565] | [57..626] |
|
|
0.0 | [13..565] | [67..625] |
|
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0.0 | [2..565] | [52..638] |
|
|
0.0 | [71..563] | [1..487] |
|
|
0.0 | [69..563] | [1..487] |
|
|
0.0 | [69..563] | [1..487] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MKRTVISSSN AYASKRSRLD IEHDFEQYHS LNKKYYPRPI TRTGANQFNN KSRAKPMEIV 60
61 EKLQKKQKTS F
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.300 | a.3.1 | Cytochrome c |
| View | Download | 0.319 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.241 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.411 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.250 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.236 | d.58.48 | MTH1187-like |
| View | Download | 0.235 | a.4.1 | Homeodomain-like |
| View | Download | 0.206 | a.60.5 | Barrier-to-autointegration factor, BAF |
| Term | Confidence | Notes |
| blue light photoreceptor activity | 9.1431674572348 | bayes_pls_golite062009 |
| photoreceptor activity | 6.86138041842095 | bayes_pls_golite062009 |
| DNA photolyase activity | 5.59238172310626 | bayes_pls_golite062009 |
| transcription repressor activity | 4.08500855631983 | bayes_pls_golite062009 |
| transcription regulator activity | 3.49617875539388 | bayes_pls_golite062009 |
| nucleic acid binding | 2.19167058827256 | bayes_pls_golite062009 |
| binding | 2.13238451443633 | bayes_pls_golite062009 |
| DNA binding | 2.05514577638135 | bayes_pls_golite062009 |
| deoxyribodipyrimidine photo-lyase activity | 2.01343813518186 | bayes_pls_golite062009 |
| FAD binding | 1.81559602758107 | bayes_pls_golite062009 |
| G-protein coupled photoreceptor activity | 0.698591133261382 | bayes_pls_golite062009 |
| catalytic activity | 0.609980967042895 | bayes_pls_golite062009 |
| damaged DNA binding | 0.5555984473366 | bayes_pls_golite062009 |
| protein binding | 0.452275661161724 | bayes_pls_golite062009 |
|
Region A: Residues: [72-224] |
1 11 21 31 41 51
| | | | | |
1 ENVSTVMHWF RNDLRLYDNV GLYKSVALFQ QLRQKNAKAK LYAVYVINED DWRAHMDSGW 60
61 KLMFIMGALK NLQQSLAELH IPLLLWEFHT PKSTLSNSKE FVEFFKEKCM NVSSGTGTII 120
121 TANIEYQTDE LYRDIRLLEN EDHRLQLKYY HDS
|
|
Region B: Residues: [260-284] |
1 11 21 31 41 51
| | | | | |
1 STSEICHLHI IEPLKYNETF ELKPF
|
| Detection Method: | |
| Confidence: | 809.0103 |
| Match: | 1dnpA_ |
| Description: | C-terminal domain of DNA photolyase; DNA photolyase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [225-259] |
1 11 21 31 41 51
| | | | | |
1 CIVAPGLITT DRGTNYSVFT PWYKKWVLYV NNYKK
|
|
Region B: Residues: [285-400] |
1 11 21 31 41 51
| | | | | |
1 QYSLPDEFLQ YIPKSKWCLP DVSEEAALSR LKDFLGTKSS KYNNEKDMLY LGGTSGLSVY 60
61 ITTGRISTRL IVNQAFQSCN GQIMSKALKD NSSTQNFIKE VAWRDFYRHC MCNWPY
|
| Detection Method: | |
| Confidence: | 809.0103 |
| Match: | 1dnpA_ |
| Description: | C-terminal domain of DNA photolyase; DNA photolyase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [401-565] |
1 11 21 31 41 51
| | | | | |
1 TSMGMPYRLD TLDIKWENNP VAFEKWCTGN TGIPIVDAIM RKLLYTGYIN NRSRMITASF 60
61 LSKNLLIDWR WGERWFMKHL IDGDSSSNVG GWGFCSSTGI DAQPYFRVFN MDIQAKKYDP 120
121 QMIFVKQWVP ELISSENKRP ENYPKPLVDL KHSRERALKV YKDAM
|
| Detection Method: | |
| Confidence: | 809.0103 |
| Match: | 1dnpA_ |
| Description: | C-terminal domain of DNA photolyase; DNA photolyase |
| Matching Structure (courtesy of the PDB): |
|
