| Protein: | SKI7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 747 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKI7.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..747] | [1..747] |
|
|
0.0 | [261..746] | [1..440] |
|
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0.0 | [261..746] | [1..440] |
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0.0 | [261..746] | [1..440] |
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0.0 | [261..746] | [1..440] |
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|
0.0 | [261..746] | [1..440] |
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0.0 | [261..746] | [1..438] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MSLLEQLARK RIEKSKGLLS ADQSHSTSKS ASLLERLHKN RETKDNNAET KRKDLKTLLA 60
61 KDKVKRSDFT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [71-260] |
1 11 21 31 41 51
| | | | | |
1 PNQHSVSLSL KLSALKKSNS DLEKQGKSVT LDSKENELPT KRKSPDDKLN LEESWKAIKE 60
61 MNHYCFLKND PCINQTDDFA FTNFIIKDKK NSLSTSIPLS SQNSSFLSLK KHNNELLGIF 120
121 VPCNLPKTTR KVAIENFNRP SPDDIIQSAQ LNAFNEKLEN LNIKSVPKAE KKEPINLQTP 180
181 PTESIDIHSF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [261-293] |
1 11 21 31 41 51
| | | | | |
1 IATHPLNLTC LFLGDTNAGK STLLGHLLYD LNE
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|
Region B: Residues: [337-516] |
1 11 21 31 41 51
| | | | | |
1 KVIQVENDLL PPSSTLTLID TPGSIKYFNK ETLNSILTFD PEVYVLVIDC NYDSWEKSLD 60
61 GPNNQIYEIL KVISYLNKNS ACKKHLIILL NKADLISWDK HRLEMIQSEL NYVLKENFQW 120
121 TDAEFQFIPC SGLLGSNLNK TENITKSKYK SEFDSINYVP EWYEGPTFFS QLYLLVEHNM 180
181
|
| Detection Method: | |
| Confidence: | 1110.0 |
| Match: | 1f60A_ |
| Description: | Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ribonuclease activity | 4.3040603813219 | bayes_pls_golite062009 |
| hydrolase activity | 2.55157966585974 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 1.44266227866728 | bayes_pls_golite062009 |
| binding | 1.41264401383678 | bayes_pls_golite062009 |
| exonuclease activity | 1.15670533472751 | bayes_pls_golite062009 |
| nuclease activity | 1.06224744208356 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.860102064846772 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.759324158861044 | bayes_pls_golite062009 |
| RNA binding | 0.707596564331465 | bayes_pls_golite062009 |
| nucleic acid binding | 0.625617128641089 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.569910969126728 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.568840867400671 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.568779924702229 | bayes_pls_golite062009 |
| nucleotide binding | 0.564275755355315 | bayes_pls_golite062009 |
| 0.40076293158639 | bayes_pls_golite062009 | |
| translation regulator activity | 0.29096092258568 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.274994961137851 | bayes_pls_golite062009 |
| translation termination factor activity | 0.269303802954244 | bayes_pls_golite062009 |
| translation release factor activity | 0.252222008028593 | bayes_pls_golite062009 |
| ATP binding | 0.1860481660648 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.152859582615242 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.138615225841109 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.133017653323467 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| structural molecule activity | 0.11239762372728 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| DNA binding | 0.0064778111446141 | bayes_pls_golite062009 |
|
Region A: Residues: [294-336] |
1 11 21 31 41 51
| | | | | |
1 ISMSSMRELQ KKSSNLDPSS SNSFKVILDN TKTERENGFS MFK
|
|
Region B: Residues: [517-638] |
1 11 21 31 41 51
| | | | | |
1 NKIETTLEEP FVGTILQSSV LQPIAEINYV SLKVLINSGY IQSGQTIEIH TQYEDFHYYG 60
61 IVSRMKNSKQ ILETNTKNNI SVGLNPDILE VLVKIHNTED FTKKQFHIRK GDIIIHSRKT 120
121 NT
|
| Detection Method: | |
| Confidence: | 1110.0 |
| Match: | 1f60A_ |
| Description: | Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [639-747] |
1 11 21 31 41 51
| | | | | |
1 LSPNLPNTLK LLALRLIKLS IQTHALSDPV DLGSELLLYH NLTHNAVKLV KILGTNDISI 60
61 NPNQSLIVEV EIIEPDFALN VIDSKYITNN IVLTSIDHKV IAVGRIACQ
|
| Detection Method: | |
| Confidence: | 1110.0 |
| Match: | 1f60A_ |
| Description: | Elongation factor eEF-1alpha, domain 2; Elongation factor eEF-1alpha, C-terminal domain; Elongation factor eEF-1alpha, N-terminal (G) domain |
| Matching Structure (courtesy of the PDB): |
|
