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View Structure Prediction Details

Protein: SIW14
Organism: Saccharomyces cerevisiae
Length: 281 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIW14.

Description E-value Query
Range
Subject
Range
SIW14_YEAST - Tyrosine-protein phosphatase SIW14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIW14...
SIW14 - Tyrosine phosphatase that plays a role in actin filament organization and endocytosis; localized to ...
2.0E-91 [1..281] [1..281]
gi|15810022, gi|... - gi|26452426|dbj|BAC43298.1| unknown protein [Arabidopsis thaliana], gi|21555065|gb|AAM63767.1| conta...
5.0E-41 [117..271] [30..183]
gi|76363712 - gi|76363712|ref|XP_888539.1| hypothetical protein [Leishmania major strain Friedlin]
gi|15027525 - gi|15027525|emb|CAC44917.1| conserved hypothetical protein [Leishmania major]
9.0E-39 [109..279] [4..173]
gi|7413671 - gi|7413671|emb|CAB85704.1| protein phosphatase [Candida albicans]
3.0E-33 [67..263] [145..325]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLYQAKNDE GSDPKSSSKI DDLIENEAEI IRLIKEDGKL LIDNGDGRDI HNIIQEDKLL  60
   61 SVEFNEVLKR FHGEEKSDIP RKEF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.369 a.77.1 DEATH domain
View Download 0.508 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.508 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.503 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.503 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.502 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.470 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.470 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.369 a.77.1 DEATH domain
View Download 0.356 a.64.1 Saposin
View Download 0.346 a.77.1 DEATH domain
View Download 0.340 d.58.49 YajQ-like
View Download 0.334 a.11.1 Acyl-CoA binding protein
View Download 0.302 a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.301 d.58.8 Viral DNA-binding domain
View Download 0.280 a.3.1 Cytochrome c
View Download 0.279 d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.277 d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.271 d.74.2 C-terminal domain of arginine repressor
View Download 0.268 d.42.1 POZ domain
View Download 0.254 a.77.1 DEATH domain
View Download 0.252 d.58.24 CheY-binding domain of CheA
View Download 0.244 d.70.1 Yest killer toxins
View Download 0.225 b.55.1 PH domain-like
View Download 0.219 d.52.1 Alpha-lytic protease prodomain
View Download 0.215 a.144.2 Ribosomal protein L20
View Download 0.214 d.58.8 Viral DNA-binding domain
View Download 0.208 a.60.1 SAM/Pointed domain
View Download 0.207 a.11.1 Acyl-CoA binding protein
View Download 0.205 d.74.1 Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View Download 0.203 d.58.24 CheY-binding domain of CheA
View Download 0.202 d.57.1 DNA damage-inducible protein DinI

Predicted Domain #2
Region A:
Residues: [85-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEDEDDGYDS NEHHQKTIEV MNTLNHVINK EVIPPENFSH VVGEIYRSSF PRQENFSFLH  60
   61 ERLKLKSILV LIPEEYPQEN LNFLKLTGIK LYQVG

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [197-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KALEIVLNPA NQPILIHCNR GK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 1d5rA_
Description: Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain; Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoprotein phosphatase activity 7.30669036331612 bayes_pls_golite062009
phosphatase activity 6.6585143972081 bayes_pls_golite062009
phosphoric ester hydrolase activity 6.44546424348532 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 5.56007278295923 bayes_pls_golite062009
protein tyrosine phosphatase activity 5.3097342170423 bayes_pls_golite062009
transmembrane receptor protein phosphatase activity 2.94635032478625 bayes_pls_golite062009
transmembrane receptor protein tyrosine phosphatase activity 2.94635032478625 bayes_pls_golite062009
protein tyrosine/serine/threonine phosphatase activity 2.77531895423367 bayes_pls_golite062009
protein serine/threonine phosphatase activity 1.95004535887255 bayes_pls_golite062009
hydrolase activity 1.5596484415033 bayes_pls_golite062009
protein binding 1.28180613509993 bayes_pls_golite062009
binding 1.27238793273026 bayes_pls_golite062009
inositol or phosphatidylinositol phosphatase activity 1.1200449509328 bayes_pls_golite062009
catalytic activity 1.06283028154109 bayes_pls_golite062009
lipid phosphatase activity 1.05085928819585 bayes_pls_golite062009
non-membrane spanning protein tyrosine phosphatase activity 0.724257798127697 bayes_pls_golite062009
cytoskeletal protein binding 0.541577955624444 bayes_pls_golite062009
actin binding 0.174917691236515 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.0776644624761281 bayes_pls_golite062009
kinase activity 0.0715870881653981 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [180-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNKEPFVN IPSHLLT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [219-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRTGCLIGCI RKLQNWSLTM IFDEYRRFAF PKARALDQQF IEMYDDDEIK RIASKNNWLP  60
   61 LQW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.69897
Match: 1d5rA_
Description: Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain; Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle