Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSS1.
Description |
E-value |
Query Range |
Subject Range |
gi|557724 - gi|557724|gb|AAC49144.1| DSS-1
|
0.0 |
[1..969] |
[1..969] |
gi|238903286, gi... - gi|238903286|ref|YP_002929082.1| exoribonuclease R, RNase R [Escherichia coli BW2952], gi|238861060|...
gi|194439533, gi... - gi|83585083|ref|ZP_00923736.1| COG0557: Exoribonuclease R [Escherichia coli 101-1], gi|194439533|ref...
EG11259 - exoribonuclease R, RNase R / Exoribonuclease R, RNase R
gi|85676930, gi|... - gi|89110899|ref|AP_004679.1| exoribonuclease R, RNase R [Escherichia coli str. K-12 substr. W3110], ...
RNR_ECOLI - Ribonuclease R (EC 3.1.-.-) (RNase R) (Protein vacB) - Escherichia coli
EG11259 - exoribonuclease R, RNase R / Exoribonuclease R, RNase R
gi|169891460, gi... - gi|170083625|ref|YP_001732945.1| exoribonuclease R, RNase R [Escherichia coli str. K-12 substr. DH10...
gi|253976009, gi... - gi|254164108|ref|YP_003047216.1| exoribonuclease R, RNase R [Escherichia coli B str. REL606], gi|253...
gi|253775196, gi... - gi|254290858|ref|YP_003056606.1| exoribonuclease R, RNase R [Escherichia coli BL21(DE3)], gi|2539801...
gi|251787428, gi... - gi|251787428|ref|YP_003001732.1| hypothetical protein B21_04008 [Escherichia coli BL21], gi|24237970...
|
0.0 |
[354..940] |
[105..677] |
gi|15804768, gi|... - gi|15804768|ref|NP_290809.1| putative enzyme [Escherichia coli O157:H7 EDL933], gi|12519167|gb|AAG59...
gi|13364632 - gi|13364632|dbj|BAB38578.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
gi|13364632 - gi|13364632|dbj|BAB38578.1| putative enzyme [Escherichia coli O157:H7]
gi|25298860, gi|... - pir||C86114 probable enzyme vacB [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ...
|
0.0 |
[354..940] |
[119..691] |
RNR_SHIFL - Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV=4
gi|161485844 - gi|161485844|ref|NP_710044.2| exoribonuclease R [Shigella flexneri 2a str. 301]
gi|161486368 - gi|161486368|ref|NP_839722.2| exoribonuclease R [Shigella flexneri 2a str. 2457T]
|
0.0 |
[354..940] |
[105..677] |
RNR_HAEIN - Ribonuclease R OS=Haemophilus influenzae GN=rnr PE=3 SV=1
RNR_HAEIN - Ribonuclease R OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rnr PE=3 SV=...
|
0.0 |
[353..935] |
[112..681] |
gi|12722391, gi|... - gi|15603819|ref|NP_246893.1| hypothetical protein PM1954 [Pasteurella multocida subsp. multocida str...
|
0.0 |
[356..935] |
[115..682] |
gi|213582912 - gi|213582912|ref|ZP_03364738.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Typhi...
gi|213648976 - gi|213648976|ref|ZP_03379029.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Typhi...
gi|213852965 - gi|213852965|ref|ZP_03382497.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Typhi...
gi|214003353 - gi|214003353|ref|ZP_03414088.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Typhi...
gi|197096561, gi... - gi|197365084|ref|YP_002144721.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Para...
gi|205274906, gi... - gi|205355125|ref|YP_002228926.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Gall...
gi|207859513, gi... - gi|207859513|ref|YP_002246164.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Ente...
gi|213052275 - gi|213052275|ref|ZP_03345153.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Typhi...
gi|168822506, gi... - gi|205341075|gb|EDZ27839.1| ribonuclease R [Salmonella enterica subsp. enterica serovar Weltevreden ...
gi|194409041, gi... - gi|194450737|ref|YP_002048411.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Heid...
gi|238910526 - gi|238910526|ref|ZP_04654363.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Tenne...
gi|194457010, gi... - gi|194470646|ref|ZP_03076630.1| ribonuclease R [Salmonella enterica subsp. enterica serovar Kentucky...
lcl|NC_016856.1_... - [gene=vacB] [protein=exoribonuclease R] [protein_id=YP_005240681.1] [location=4623894..4626332]
gi|197247664, gi... - gi|197247664|ref|YP_002149282.1| ribonuclease R [Salmonella enterica subsp. enterica serovar Agona s...
gi|161617638, gi... - gi|161617638|ref|YP_001591603.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Para...
gi|205327245, gi... - gi|205327245|gb|EDZ14009.1| ribonuclease R [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-...
gi|205334286, gi... - gi|205334286|gb|EDZ21050.1| ribonuclease R [Salmonella enterica subsp. enterica serovar Kentucky str...
gi|205336060, gi... - gi|205336060|gb|EDZ22824.1| ribonuclease R [Salmonella enterica subsp. enterica serovar Heidelberg s...
gi|16505495, gi|... - gi|25298865|pir||AH1049 ribonuclease R (RNase R) (EC 3.1.-.-) [imported] - Salmonella enterica subsp...
gi|29140305, gi|... - gi|29144666|ref|NP_808008.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Typhi st...
gi|56416159, gi|... - gi|56416159|ref|YP_153234.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Paratyph...
gi|16767614, gi|... - gi|16767614|ref|NP_463229.1| exoribonuclease R [Salmonella typhimurium LT2], gi|16422929|gb|AAL23188...
gi|16763187 - gi|16763187|ref|NP_458804.1| exoribonuclease R [Salmonella enterica subsp. enterica serovar Typhi st...
|
0.0 |
[354..940] |
[105..677] |
RNR_BACSU - Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=2 SV=1
gi|221324838 - gi|221324838|ref|ZP_03606132.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. SMY]
gi|221320554 - gi|221320554|ref|ZP_03601848.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. JH642]
gi|221315638 - gi|221315638|ref|ZP_03597443.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. NCIB 3610]
RNR_BACSU - Ribonuclease R OS=Bacillus subtilis GN=rnr PE=3 SV=1
|
0.0 |
[356..951] |
[95..681] |
gi|89102912, gi|... - gi|89102912|ref|ZP_01175514.1| COG0557: Exoribonuclease R [Yersinia pestis biovar Orientalis str. IP...
gi|108781807, gi... - gi|108809894|ref|YP_653810.1| exoribonuclease R [Yersinia pestis Antiqua], gi|108781807|gb|ABG15865....
gi|170026006, gi... - gi|170026006|ref|YP_001722511.1| exoribonuclease R [Yersinia pseudotuberculosis YPIII], gi|169752540...
gi|229679701, gi... - gi|229903931|ref|ZP_04519044.1| exoribonuclease R, RNase R [Yersinia pestis Nepal516], gi|229679701|...
gi|150260576, gi... - gi|150260576|ref|ZP_01917304.1| ribonuclease R [Yersinia pestis CA88-4125], gi|149289984|gb|EDM40061...
Q66FA8|Q66FA8_YERPS - Ribonuclease R - Yersinia pseudotuberculosis
gi|162419638, gi... - gi|162419638|ref|YP_001605272.1| exoribonuclease R [Yersinia pestis Angola], gi|162352453|gb|ABX8640...
gi|165989243, gi... - gi|166011884|ref|ZP_02232782.1| ribonuclease R [Yersinia pestis biovar Antiqua str. E1979001], gi|16...
gi|165926755, gi... - gi|165926755|ref|ZP_02222587.1| ribonuclease R [Yersinia pestis biovar Orientalis str. F1991016], gi...
gi|167400711, gi... - gi|167400711|ref|ZP_02306220.1| ribonuclease R [Yersinia pestis biovar Antiqua str. UG05-0454], gi|1...
gi|166204825, gi... - gi|166214030|ref|ZP_02240065.1| ribonuclease R [Yersinia pestis biovar Antiqua str. B42003004], gi|1...
gi|167423328, gi... - gi|167423328|ref|ZP_02315081.1| ribonuclease R [Yersinia pestis biovar Mediaevalis str. K1973002], g...
gi|167419145, gi... - gi|167419145|ref|ZP_02310898.1| ribonuclease R [Yersinia pestis biovar Orientalis str. MG05-1020], g...
gi|25298864 - pir||AD0047 ribonuclease R (EC 3.1.-.-) [imported] - Yersinia pestis (strain CO92)
gi|45440390, gi|... - gi|45440390|ref|NP_991929.1| exoribonuclease R [Yersinia pestis biovar Microtus str. 91001], gi|4543...
gi|21957350, gi|... - gi|22124551|ref|NP_667974.1| exoribonuclease R [Yersinia pestis KIM], gi|21957350|gb|AAM84225.1|AE01...
gi|115346194, gi... - gi|218927583|ref|YP_002345458.1| exoribonuclease R [Yersinia pestis CO92], gi|16120715|ref|NP_404028...
gi|51588066, gi|... - gi|51594784|ref|YP_068975.1| exoribonuclease R [Yersinia pseudotuberculosis IP 32953], gi|51588066|e...
gi|153947076, gi... - gi|77631431|ref|ZP_00794017.1| COG0557: Exoribonuclease R [Yersinia pseudotuberculosis IP 31758], gi...
gi|229836640, gi... - gi|229836640|ref|ZP_04456806.1| exoribonuclease R, RNase R [Yersinia pestis Pestoides A], gi|2297063...
gi|229840252, gi... - gi|229840252|ref|ZP_04460411.1| exoribonuclease R, RNase R [Yersinia pestis biovar Orientalis str. P...
gi|229690640, gi... - gi|229842330|ref|ZP_04462485.1| exoribonuclease R, RNase R [Yersinia pestis biovar Orientalis str. I...
|
0.0 |
[354..940] |
[105..678] |