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Protein Overview: RNR_BACSU

General Information:
Name(s) found: RNR_BACSU [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=2 SV=1 [Swiss-Prot]
    • Organism: Bacillus subtilis subsp. subtilis str. 168
    Length: 779 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEAFMEKL LSFMKEEAYK PLTVQELEEM LNITEAEEFK ELVKALVALE EKGLIVRTRS  60
   61 DRYGIPEKMN LIKGKISAHA KGFAFLLPED TSLSDVFIPP NELNTAMNGD IVMVRLNSQS 120
  121 SGSRQEGTVI RILERAIQRV VGTYTETRNF GFVIPDDKKI TSDIFIPKNG KNGAAEGHKV 180
  181 VVKLTSYPEG RMNAEGEVET ILGHKNDPGI DILSVIHKHG LPGEFPADAM EQASSTPDTI 240
  241 DEKDLKDRRD LRDQVIVTID GADAKDLDDA VTVTKLDDGS YKLGVHIADV SHYVTENSPI 300
  301 DKEALERGTS VYLVDRVIPM IPHRLSNGIC SLNPKVDRLT LSCEMTINSQ GQVTEHEIFQ 360
  361 SVIKTTERMT YSDVNKILVD DDEELKQKYE PLVPMFKDME RLAQILRDKR MDRGAVDFDF 420
  421 KEAKVLVDDE GAVKDVVIRE RSVAEKLIEE FMLVANETVA EHFHWMNVPF IYRIHEEPNA 480
  481 EKLQKFLEFV TTFGYVVKGT AGNIHPRALQ SILDAVRDRP EETVISTVML RSMKQAKYDP 540
  541 QSLGHFGLST EFYTHFTSPI RRYPDLIVHR LIRTYLINGK VDEATQEKWA ERLPDIAEHT 600
  601 SSMERRAVDA ERETDDLKKA EYMLDKIGEE FDGMISSVTN FGMFVELPNT IEGLVHVSFM 660
  661 TDDYYRFDEQ HFAMIGERTG NVFRIGDEIT VKVVDVNKDE RNIDFEIVGM KGTPRRPREL 720
  721 DSSRSRKRGK PARKRVQSTN TPVSPAPSEE KGEWFTKPKK KKKKRGFQNA PKQKRKKKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..712] PSI-BLAST 113.0 No description for 2ix0A was found.
    2 View Details [713..779] PSI-BLAST 46.69897 No description for 2oceA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.50222432647158 bayes_pls_golite062009
  • binding
    		•  2.45645422079711 bayes_pls_golite062009
  • ribonuclease activity
    		•  2.29464134578835 bayes_pls_golite062009
  • DNA binding
    		•  2.01509187496805 bayes_pls_golite062009
  • RNA binding
    		•  0.764074810825563 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.645338044440112 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.645324285187609 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.645324285187609 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.625278911312822 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.593594938681299 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.579049615800331 bayes_pls_golite062009
  • hydrolase activity
    		•  0.184672913742179 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.00505175337890207 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle