| Protein: | TRI1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 226 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRI1.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-57 | [1..226] | [1..226] |
|
|
1.0E-53 | [47..222] | [206..398] |
|
|
3.0E-52 | [47..222] | [147..339] |
|
|
2.0E-50 | [41..223] | [201..402] |
|
|
1.0E-48 | [50..222] | [230..417] |
|
|
1.0E-48 | [50..222] | [230..417] |
|
|
6.0E-48 | [1..219] | [1..202] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MADINKYIPM VDAILSVSNP DEISPKRVRK ALQILYSVNL DSQRKLINEL ILERFGDIQE 60
61 NPRVLIPKND LISRDQELSL RLQK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.719 | 0.528 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.791 | 0.012 | nucleolus | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.726 | 0.011 | nucleolus | a.64.1 | Saposin |
| View | Download | 0.774 | 0.006 | nucleolus | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.762 | 0.003 | cytoplasm | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.704 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.660 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.649 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.647 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.637 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.616 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.587 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.564 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.562 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.561 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.561 | N/A | N/A | d.203.1 | DsrC, the gamma subunit of dissimilatory sulfite reductase |
| View | Download | 0.556 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.542 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.537 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.536 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.533 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.532 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.524 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.495 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.495 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.494 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.487 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.482 | N/A | N/A | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.479 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.473 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.471 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.467 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.455 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.450 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.433 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.432 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.428 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.424 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.422 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.420 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.417 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.412 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.406 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.397 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.393 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.387 | N/A | N/A | a.101.1 | Uteroglobin-like |
| View | Download | 0.383 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.382 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.378 | N/A | N/A | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.370 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.351 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.345 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.342 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.341 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.339 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.333 | N/A | N/A | a.65.1 | Annexin |
| View | Download | 0.332 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.332 | N/A | N/A | d.102.1 | Regulatory factor Nef |
| View | Download | 0.329 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.323 | N/A | N/A | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.318 | N/A | N/A | a.159.2 | FF domain |
| View | Download | 0.316 | N/A | N/A | a.140.2 | SAP domain |
| View | Download | 0.315 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.308 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.307 | N/A | N/A | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.295 | N/A | N/A | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.290 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.286 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.274 | N/A | N/A | d.45.1 | ClpS-like |
| View | Download | 0.270 | N/A | N/A | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.264 | N/A | N/A | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.264 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.261 | N/A | N/A | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.260 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.259 | N/A | N/A | c.44.2 | Enzyme IIB-cellobiose |
| View | Download | 0.259 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.259 | N/A | N/A | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.259 | N/A | N/A | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.259 | N/A | N/A | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.254 | N/A | N/A | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.254 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.252 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.251 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.247 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.246 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.240 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.237 | N/A | N/A | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.233 | N/A | N/A | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.231 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.229 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.229 | N/A | N/A | a.2.4 | Theta subunit of DNA polymerase III |
| View | Download | 0.227 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.221 | N/A | N/A | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.219 | N/A | N/A | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.215 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.212 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.211 | N/A | N/A | b.82.4 | Regulatory protein AraC |
| View | Download | 0.209 | N/A | N/A | a.162.1 | Pre-protein croslinking domain of SecA |
| View | Download | 0.208 | N/A | N/A | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.206 | N/A | N/A | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.202 | N/A | N/A | a.3.1 | Cytochrome c |
| Term | Confidence | Notes |
| binding | 2.63842828741542 | bayes_pls_golite062009 |
| transcription regulator activity | 2.62775554429027 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.953438255689584 | bayes_pls_golite062009 |
| histone binding | 0.948950535074526 | bayes_pls_golite062009 |
| protein binding | 0.529408559970229 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.439630834571696 | bayes_pls_golite062009 |
|
Region A: Residues: [85-226] |
1 11 21 31 41 51
| | | | | |
1 EEERPLRSTR KRKGKSESKS KRKKKKNDSP DSNSISVRKV LLSAPLQKFL GSEELPRTQV 60
61 VKMIWQYIKE HDLQNPKDRR EILCDEKMEP IFGKKMTMFS MNKLLTKHLF NPDEIVKHEE 120
121 EQKQTPEKEI KLENESLPNL SG
|
| Detection Method: | |
| Confidence: | 51.017729 |
| Match: | PF02201 |
| Description: | SWIB/MDM2 domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.01592136607858 | bayes_pls_golite062009 |
| binding | 3.20303599400601 | bayes_pls_golite062009 |
| basal transcription repressor activity | 2.69162769894095 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.58234407051051 | bayes_pls_golite062009 |
| transcription repressor activity | 1.98538788872171 | bayes_pls_golite062009 |
| transcription activator activity | 1.83085389017135 | bayes_pls_golite062009 |
| transcription factor binding | 1.73032563380905 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.60414428986898 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.51390743508971 | bayes_pls_golite062009 |
| protein binding | 1.38134467541454 | bayes_pls_golite062009 |
| ligase activity | 0.802664465339603 | bayes_pls_golite062009 |
| structural molecule activity | 0.66106995897056 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.15313128037113 | bayes_pls_golite062009 |
| catalytic activity | 0.121624777548864 | bayes_pls_golite062009 |
