| Protein: | MSN2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 704 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSN2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [248..703] | [19..530] |
|
|
0.0 | [246..703] | [43..546] |
|
Region A: Residues: [1-162] |
1 11 21 31 41 51
| | | | | |
1 MTVDHDFNSE DILFPIESMS SIQYVENNNP NNINNDVIPY SLDIKNTVLD SADLNDIQNQ 60
61 ETSLNLGLPP LSFDSPLPVT ETIPSTTDNS LHLKADSNKN RDARTIENDS EIKSTNNASG 120
121 SGANQYTTLT SPYPMNDILY NMNNPLQSPS PSSVPQNPTI NP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [163-351] |
1 11 21 31 41 51
| | | | | |
1 PINTASNETN LSPQTSNGNE TLISPRAQQH TSIKDNRLSL PNGANSNLFI DTNPNNLNEK 60
61 LRNQLNSDTN SYSNSISNSN SNSTGNLNSS YFNSLNIDSM LDDYVSSDLL LNDDDDDTNL 120
121 SRRRFSDVIT NQFPSMTNSR NSISHSLDLW NHPKINPSNR NTNLNITTNS TSSSNASPNT 180
181 TTMNANADS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [352-543] |
1 11 21 31 41 51
| | | | | |
1 NIAGNPKNND ATIDNELTQI LNEYNMNFND NLGTSTSGKN KSACPSSFDA NAMTKINPSQ 60
61 QLQQQLNRVQ HKQLTSSHNN SSTNMKSFNS DLYSRRQRAS LPIIDDSLSY DLVNKQDEDP 120
121 KNDMLPNSNL SSSQQFIKPS MILSDNASVI AKVATTGLSN DMPFLTEEGE QNANSTPNFD 180
181 LSITQMNMAP LS
|
| Detection Method: | |
| Confidence: | 56.274545 |
| Match: | 1tf6A_ |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| transcription repressor activity | 1.64349785387632 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.93314267845352 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.53991278722671 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.10558148421807 | bayes_pls_golite062009 |
|
Region A: Residues: [544-630] |
1 11 21 31 41 51
| | | | | |
1 PASSSSTSLA TNHFYHHFPQ QGHHTMNSKI GSSLRRRKSA VPLMGTVPLT NQQNNISSSS 60
61 VNSTGNGAGV TKERRPSYRR KSMTPSR
|
| Detection Method: | |
| Confidence: | 114.06601 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [631-704] |
1 11 21 31 41 51
| | | | | |
1 RSSVVIESTK ELEEKPFHCH ICPKSFKRSE HLKRHVRSVH SNERPFACHI CDKKFSRSDN 60
61 LSQHIKTHKK HGDI
|
| Detection Method: | |
| Confidence: | 166.70927 |
| Match: | 1jk1A_ |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
