| Protein: | ARG81 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 880 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARG81.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..880] | [1..880] |
|
|
1.0E-37 | [2..192] | [11..231] |
|
|
1.0E-31 | [2..149] | [35..201] |
|
|
2.0E-30 | [11..214] | [10..205] |
|
|
5.0E-30 | [2..149] | [35..200] |
|
|
2.0E-29 | [3..185] | [58..239] |
|
|
7.0E-28 | [2..149] | [36..201] |
|
Region A: Residues: [1-69] |
1 11 21 31 41 51
| | | | | |
1 MGISSKNGPK KMGRAKTFTG CWTCRGRKVK CDLRHPHCQR CEKSNLPCGG YDIKLRWSKP 60
61 MQFDPYGVP
|
| Detection Method: |  |
| Confidence: | 46.68867 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| transcription regulator activity | 2.7831619208765 | bayes_pls_golite062009 |
| DNA binding | 2.61829684541806 | bayes_pls_golite062009 |
| nucleic acid binding | 2.43465257824542 | bayes_pls_golite062009 |
| transcription factor activity | 1.55251487621784 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.87785810571597 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.83092951524649 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.79838087621523 | bayes_pls_golite062009 |
|
Region A: Residues: [70-880] |
1 11 21 31 41 51
| | | | | |
1 IPQNSPATTT NLSGSVDEPQ YQRRNIDFVR YDEEYVYHED MDDELTMLHT PPIEKISDNK 60
61 TWIIKKFGVF KGTDKIDKQY APRKKRNRKR VAKSLESSAS ISLSSLPSSS TISFPIRHIE 120
121 DKLRNKGHVK TGILSANDGV PPTPNLLDYD WNNLNITGYE WISSELRDDA LLSAVTLQGH 180
181 HLGHTQPQEI SLEENSNVVS GEEHVNAKEH GCAFEADNQG SSTLPNKAAS ANDKLYQQNL 240
241 KLLFQKNSSN SEEPDPQALI DDVFVNIEPR SLPASDLNKI TLAPPNEESR MPKSMLELTS 300
301 YSSDLPPELV DIIPKTDLTV HGLARFLLNH YFNNVADKMT VVVLEKNPWK TLYFPRALMA 360
361 LGDLAGLGQS SNSRNALLNA LLAVSCFHLQ SKYPRNYKLQ KYFLGLGIEL RNQASNFLRL 420
421 CLNTKSSIPE KYKDVLTAIL SMNSIDVVWG TMADCQDHLA LCEDFVESRM KLRPNISEKT 480
481 KTLHRIFSFL KLIQDSTALD KVRAKEIVIL PSEEDDNYKP LDTSNATTSS SEPRVDVVQE 540
541 GLFREALNEN DGKIHIEFVK EPITNVSADS TPSSTTPPIF TNIATESYYN KSDISKLVSK 600
601 TDENIIGTDS LYGLPNSLIL LFSDCVRIVR HNEYYNLTYL PVPRKFNELS LNFEKRLLKW 660
661 KSEWNFHQEN SEGKSFINST AEALYHHTMS FYFSLIIYYF TMARSLNCQF LQNYVAKVLD 720
721 HLNAMEELVD QKKVKIVPLI WQGFMAGCAC TDENRQQEFR RWAAKLAESG VGSYWGARQV 780
781 MLEVWRRRKE DEPGDNWYSV YKDWEMNLML S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [205-295] |
1 11 21 31 41 51
| | | | | |
1 ANDGVPPTPN LLDYDWNNLN ITGYEWISSE LRDDALLSAV TLQGHHLGHT QPQEISLEEN 60
61 SNVVSGEEHV NAKEHGCAFE ADNQGSSTLP N
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [296-355] |
1 11 21 31 41 51
| | | | | |
1 KAASANDKLY QQNLKLLFQK NSSNSEEPDP QALIDDVFVN IEPRSLPASD LNKITLAPPN 60
61
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [356-580] |
1 11 21 31 41 51
| | | | | |
1 EESRMPKSML ELTSYSSDLP PELVDIIPKT DLTVHGLARF LLNHYFNNVA DKMTVVVLEK 60
61 NPWKTLYFPR ALMALGDLAG LGQSSNSRNA LLNALLAVSC FHLQSKYPRN YKLQKYFLGL 120
121 GIELRNQASN FLRLCLNTKS SIPEKYKDVL TAILSMNSID VVWGTMADCQ DHLALCEDFV 180
181 ESRMKLRPNI SEKTKTLHRI FSFLKLIQDS TALDKVRAKE IVILP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [581-671] |
1 11 21 31 41 51
| | | | | |
1 SEEDDNYKPL DTSNATTSSS EPRVDVVQEG LFREALNEND GKIHIEFVKE PITNVSADST 60
61 PSSTTPPIFT NIATESYYNK SDISKLVSKT D
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [672-880] |
1 11 21 31 41 51
| | | | | |
1 ENIIGTDSLY GLPNSLILLF SDCVRIVRHN EYYNLTYLPV PRKFNELSLN FEKRLLKWKS 60
61 EWNFHQENSE GKSFINSTAE ALYHHTMSFY FSLIIYYFTM ARSLNCQFLQ NYVAKVLDHL 120
121 NAMEELVDQK KVKIVPLIWQ GFMAGCACTD ENRQQEFRRW AAKLAESGVG SYWGARQVML 180
181 EVWRRRKEDE PGDNWYSVYK DWEMNLMLS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
