YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPCC320.03

General Information:
Name(s) found: SPCC320.03 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • transcription factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 867 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    cellular response to stress [IEPLink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNTLPFHS INSVNVSSAP TVNERSYPFL LDASAGVSGF NPVVSSPEKK ARMKYKKNST  60
   61 SPNMDVKSRK KVSRACDFCR QKKIRCDMDQ SPRPGNACIN CRKHHLDCNF TRTPLKRGPA 120
  121 KGFNRNADEK QKRASGSAKS SSPAVNGSVF SGNEASPSSR APSITPVDSV NTTTSAIQVP 180
  181 SVTLTAPAPL GVDQKISQDQ KPDSWLTYNA QFAQNSPQLA PSIPSPMKLS PANQQAMPPY 240
  241 PQMLGPGSIS SYTNSNLGPS AGFRPPTFFS SPSPQPYSGP ILASTAPTLD GSYLSNPSNS 300
  301 NPAVMSLSSN FPSPPKPNNP VYLPPRGNPT VNDRVSNVLP SITSFDSSVT TVPSNSPATL 360
  361 NSYTTSVPSG MSRHPMLMNP STPEPSLGVN SPSLRPLQSL NNVQNSYRVA STQAPPPHPL 420
  421 RNYTSDAESI SMRSKSTQAS DAATFREVEQ LYQENVEWDD AAIDRYYLLI HSTLPILHHS 480
  481 KARLKSELEK APINLRSSCL HAIYSLVNRP PFATLGHVFH NTPMKAIGLL NLICSNVQDL 540
  541 SNRILHLQTM ILLAIESDQR GPTTITGRNG LPQGMWLGAA IGLACNMRLH IQSHLSLQSI 600
  601 NEDMDSDEAL CRRAWWVLVV LDRWHSMSTC SPLFLPETFI NLTIQDQKLL GTFPSQLVRL 660
  661 SLIVGHISDV FQSPDPTDRQ SPIVTQQLRS EIDAFRQSVD VVWGQMNLLT LAVTHVKVLL 720
  721 ELCINARPST VLVPAMKMAT ILSSSSTPMT PLNHHFFSLA TCVLIGVFDL PELQNEARRG 780
  781 LEHIRECIEK RRDIVSREDH EDWDYIVLKL INAKMQGMPI NSDPSIPPHV PPSSAFAYSN 840
  841 QEMDSATFKD AYLYTRLCNL GYLGFLI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] FFAS03 2.34 PPR1
    2 View Details [182..320] MSA 1.317993 View MSA. No confident structure predictions are available.
    3 View Details [321..456] MSA 4.335994 View MSA. No confident structure predictions are available.
    4 View Details [457..563] deduced N/A No confident structure predictions are available.
    5 View Details [564..747] MSA 1.131993 View MSA. No confident structure predictions are available.
    6 View Details [748..867] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.34861813464065 bayes_pls_golite062009
  • DNA binding
    		•  4.03985756894684 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.97978190843512 bayes_pls_golite062009
  • transcription factor activity
    		•  2.87348461329489 bayes_pls_golite062009
  • binding
    		•  2.82809978070212 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.80191339934741 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.67344049333457 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.50774349911815 bayes_pls_golite062009
  • transcription activator activity
    		•  0.822069987038721 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle