| Protein: | SPCC320.03 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 867 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC320.03.
| Description | E-value | Query Range |
Subject Range |
|
|
263.0 | [0..240] | [812..84] |
|
|
256.0 | [0..331] | [811..95] |
|
|
254.0 | [0..378] | [823..83] |
|
|
236.0 | [0..352] | [823..70] |
|
|
235.0 | [0..279] | [831..121] |
|
|
226.0 | [0..429] | [817..232] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MDLNTLPFHS INSVNVSSAP TVNERSYPFL LDASAGVSGF NPVVSSPEKK ARMKYKKNST 60
61 SPNMDVKSRK KVSRACDFCR QKKIRCDMDQ SPRPGNACIN CRKHHLDCNF TRTPLKRGPA 120
121 KGFNRNADEK QKRASGSAKS SSPAVNGSVF SGNEASPSSR APSITPVDSV NTTTSAIQVP 180
181 S
|
| Detection Method: |  |
| Confidence: | 2.34 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.80191339934741 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.67344049333457 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.50774349911815 | bayes_pls_golite062009 |
| transcription activator activity | 0.822069987038721 | bayes_pls_golite062009 |
|
Region A: Residues: [182-320] |
1 11 21 31 41 51
| | | | | |
1 VTLTAPAPLG VDQKISQDQK PDSWLTYNAQ FAQNSPQLAP SIPSPMKLSP ANQQAMPPYP 60
61 QMLGPGSISS YTNSNLGPSA GFRPPTFFSS PSPQPYSGPI LASTAPTLDG SYLSNPSNSN 120
121 PAVMSLSSNF PSPPKPNNP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [321-456] |
1 11 21 31 41 51
| | | | | |
1 VYLPPRGNPT VNDRVSNVLP SITSFDSSVT TVPSNSPATL NSYTTSVPSG MSRHPMLMNP 60
61 STPEPSLGVN SPSLRPLQSL NNVQNSYRVA STQAPPPHPL RNYTSDAESI SMRSKSTQAS 120
121 DAATFREVEQ LYQENV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [457-563] |
1 11 21 31 41 51
| | | | | |
1 EWDDAAIDRY YLLIHSTLPI LHHSKARLKS ELEKAPINLR SSCLHAIYSL VNRPPFATLG 60
61 HVFHNTPMKA IGLLNLICSN VQDLSNRILH LQTMILLAIE SDQRGPT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [564-747] |
1 11 21 31 41 51
| | | | | |
1 TITGRNGLPQ GMWLGAAIGL ACNMRLHIQS HLSLQSINED MDSDEALCRR AWWVLVVLDR 60
61 WHSMSTCSPL FLPETFINLT IQDQKLLGTF PSQLVRLSLI VGHISDVFQS PDPTDRQSPI 120
121 VTQQLRSEID AFRQSVDVVW GQMNLLTLAV THVKVLLELC INARPSTVLV PAMKMATILS 180
181 SSST
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [748-867] |
1 11 21 31 41 51
| | | | | |
1 PMTPLNHHFF SLATCVLIGV FDLPELQNEA RRGLEHIREC IEKRRDIVSR EDHEDWDYIV 60
61 LKLINAKMQG MPINSDPSIP PHVPPSSAFA YSNQEMDSAT FKDAYLYTRL CNLGYLGFLI 120
121
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
