| Protein: | TAF13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 167 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF13.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-48 | [1..167] | [1..167] |
|
|
2.0E-47 | [3..155] | [18..201] |
|
|
2.0E-44 | [4..156] | [3..194] |
|
|
3.0E-44 | [4..156] | [3..194] |
|
|
8.0E-36 | [13..156] | [104..267] |
|
|
1.0E-31 | [8..158] | [6..215] |
|
Region A: Residues: [1-54] |
1 11 21 31 41 51
| | | | | |
1 MSRKLKKTNL FNKDVSSLLY AYGDVPQPLQ ATVQCLDELV SGYLVDVCTN AFHT
|
| Detection Method: |  |
| Confidence: | 14.0 |
| Match: | 1bh8A_ |
| Description: | TAF(II)18 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 8.88482968293417 | bayes_pls_golite062009 |
| DNA binding | 4.24660531286828 | bayes_pls_golite062009 |
| nucleic acid binding | 4.14026521609645 | bayes_pls_golite062009 |
| transcription regulator activity | 3.91807454227165 | bayes_pls_golite062009 |
| transcription initiation factor activity | 3.78067108255869 | bayes_pls_golite062009 |
| binding | 3.14832737946099 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.02428691626433 | bayes_pls_golite062009 |
| transcription factor activity | 2.39322722597434 | bayes_pls_golite062009 |
| transcription activator activity | 1.12739348005764 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.03060091158028 | bayes_pls_golite062009 |
| protein binding | 1.01897642648285 | bayes_pls_golite062009 |
| transcription factor binding | 1.01773884290535 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.976797801726735 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.840442755533537 | bayes_pls_golite062009 |
| transcription repressor activity | 0.621482805601238 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0919482386963733 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0585868733603467 | bayes_pls_golite062009 |
|
Region A: Residues: [55-167] |
1 11 21 31 41 51
| | | | | |
1 AQNSQRNKLR LEDFKFALRK DPIKLGRAEE LIATNKLITE AKKQFNETDN QNSLKRYREE 60
61 DEEGDEMEED EDEQQVTDDD EEAAGRNSAK QSTDSKATKI RKQGPKNLKK TKK
|
| Detection Method: | |
| Confidence: | 5.958607 |
| Match: | PF02269 |
| Description: | Transcription initiation factor IID, 18kD subunit |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
