| Protein: | PRP39 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 629 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP39.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..629] | [1..629] |
|
|
4.0E-60 | [80..501] | [81..503] |
|
|
4.0E-60 | [80..501] | [71..493] |
|
|
8.0E-60 | [80..501] | [71..493] |
|
|
1.0E-58 | [80..501] | [110..532] |
|
|
8.0E-57 | [33..501] | [68..535] |
|
|
1.0E-54 | [20..496] | [134..595] |
|
Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MPDETNFTIE DIEPRPDALR GLDTQFLQDN TALVQAYRGL DWSDISSLTQ MVDVIEQTVV 60
61 KYGN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| RNA binding | 2.76684454218635 | bayes_pls_golite062009 |
| binding | 2.71974493738804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.96129657517284 | bayes_pls_golite062009 |
| protein binding | 1.6279032205159 | bayes_pls_golite062009 |
| nucleic acid binding | 1.62783430593918 | bayes_pls_golite062009 |
| DNA binding | 1.62663906748938 | bayes_pls_golite062009 |
| transcription factor activity | 0.934706586922936 | bayes_pls_golite062009 |
| signal sequence binding | 0.8574224889202 | bayes_pls_golite062009 |
| transcription factor binding | 0.441518464573089 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.19094857768269 | bayes_pls_golite062009 |
|
Region A: Residues: [65-209] |
1 11 21 31 41 51
| | | | | |
1 PNDSIKLALE TILWQILRKY PLLFGFWKRF ATIEYQLFGL KKSIAVLATS VKWFPTSLEL 60
61 WCDYLNVLCV NNPNETDFIR NNFEIAKDLI GKQFLSHPFW DKFIEFEVGQ KNWHNVQRIY 120
121 EYIIEVPLHQ YARFFTSYKK FLNEK
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [210-270] |
1 11 21 31 41 51
| | | | | |
1 NLKTTRNIDI VLRKTQTTVN EIWQFESKIK QPFFNLGQVL NDDLENWSRY LKFVTDPSKS 60
61 L
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [271-353] |
1 11 21 31 41 51
| | | | | |
1 DKEFVMSVFD RCLIPCLYHE NTWMMYIKWL TKKNISDEVV VDIYQKANTF LPLDFKTLRY 60
61 DFLRFLKRKY RSNNTLFNNI FNE
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [354-411] |
1 11 21 31 41 51
| | | | | |
1 TVSRYLKIWP NDILLMTEYL CMLKRHSFKN SLDQSPKEIL EKQTSFTKIL ETSITNYI
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1ihgA_ |
| Description: | Cyclophilin 40; Cyclophilin 40 isomerase domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [412-546] |
1 11 21 31 41 51
| | | | | |
1 NNQIDAKVHL QTLINDKNLS IVVVELIKTT WLVLKNNMQT RKYFNLYQKN ILIKNSVPFW 60
61 LTYYKFEKSN VNFTKLNKFI RELGVEIYLP TTVMNDILTD YKTFYLTHSN IVTYESSIID 120
121 SNTFDPILYP ELKMS
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1ihgA_ |
| Description: | Cyclophilin 40; Cyclophilin 40 isomerase domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [547-629] |
1 11 21 31 41 51
| | | | | |
1 NPKYDPVLNT TANVDWHKKT EWKEAGHIGI TTERPQISNS IIECNSGTLI QKPISLPNFR 60
61 NLEKINQVKI NDLYTEEFLK EGK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
