| Protein: | PRP39 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 629 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP39.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..629] | [1..629] |
|
|
4.0E-60 | [80..501] | [81..503] |
|
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4.0E-60 | [80..501] | [71..493] |
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8.0E-60 | [80..501] | [71..493] |
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1.0E-58 | [80..501] | [110..532] |
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8.0E-57 | [33..501] | [68..535] |
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1.0E-54 | [20..496] | [134..595] |
|
Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MPDETNFTIE DIEPRPDALR GLDTQFLQDN TALVQAYRGL DWSDISSLTQ MVDVIEQTVV 60
61 KYGN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.456 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.534 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.425 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.569 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.452 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.406 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.405 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.400 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.392 | a.4.1 | Homeodomain-like |
| View | Download | 0.371 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.371 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.354 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.351 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.347 | a.4.1 | Homeodomain-like |
| View | Download | 0.344 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.341 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.327 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.314 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.312 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.305 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.300 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.293 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.283 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.283 | a.4.1 | Homeodomain-like |
| View | Download | 0.281 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.278 | a.39.1 | EF-hand |
| View | Download | 0.262 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.257 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.255 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.247 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.244 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.244 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.244 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.241 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.241 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.240 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.236 | a.5.2 | UBA-like |
| View | Download | 0.234 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.233 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.231 | a.2.3 | Chaperone J-domain |
| View | Download | 0.231 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.224 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.219 | d.192.1 | YlxR-like |
| View | Download | 0.217 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.217 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.216 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.214 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.211 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.211 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.208 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.203 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.202 | a.30.1 | ROP protein |
| View | Download | 0.201 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.201 | a.5.2 | UBA-like |
| View | Download | 0.200 | a.39.1 | EF-hand |
| Term | Confidence | Notes |
| RNA binding | 2.76684454218635 | bayes_pls_golite062009 |
| binding | 2.71974493738804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.96129657517284 | bayes_pls_golite062009 |
| protein binding | 1.6279032205159 | bayes_pls_golite062009 |
| nucleic acid binding | 1.62783430593918 | bayes_pls_golite062009 |
| DNA binding | 1.62663906748938 | bayes_pls_golite062009 |
| transcription factor activity | 0.934706586922936 | bayes_pls_golite062009 |
| signal sequence binding | 0.8574224889202 | bayes_pls_golite062009 |
| transcription factor binding | 0.441518464573089 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.19094857768269 | bayes_pls_golite062009 |
|
Region A: Residues: [65-209] |
1 11 21 31 41 51
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1 PNDSIKLALE TILWQILRKY PLLFGFWKRF ATIEYQLFGL KKSIAVLATS VKWFPTSLEL 60
61 WCDYLNVLCV NNPNETDFIR NNFEIAKDLI GKQFLSHPFW DKFIEFEVGQ KNWHNVQRIY 120
121 EYIIEVPLHQ YARFFTSYKK FLNEK
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| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [210-270] |
1 11 21 31 41 51
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1 NLKTTRNIDI VLRKTQTTVN EIWQFESKIK QPFFNLGQVL NDDLENWSRY LKFVTDPSKS 60
61 L
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [271-353] |
1 11 21 31 41 51
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1 DKEFVMSVFD RCLIPCLYHE NTWMMYIKWL TKKNISDEVV VDIYQKANTF LPLDFKTLRY 60
61 DFLRFLKRKY RSNNTLFNNI FNE
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| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [354-411] |
1 11 21 31 41 51
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1 TVSRYLKIWP NDILLMTEYL CMLKRHSFKN SLDQSPKEIL EKQTSFTKIL ETSITNYI
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| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1ihgA_ |
| Description: | Cyclophilin 40; Cyclophilin 40 isomerase domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [412-546] |
1 11 21 31 41 51
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1 NNQIDAKVHL QTLINDKNLS IVVVELIKTT WLVLKNNMQT RKYFNLYQKN ILIKNSVPFW 60
61 LTYYKFEKSN VNFTKLNKFI RELGVEIYLP TTVMNDILTD YKTFYLTHSN IVTYESSIID 120
121 SNTFDPILYP ELKMS
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1ihgA_ |
| Description: | Cyclophilin 40; Cyclophilin 40 isomerase domain |
| Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [547-629] |
1 11 21 31 41 51
| | | | | |
1 NPKYDPVLNT TANVDWHKKT EWKEAGHIGI TTERPQISNS IIECNSGTLI QKPISLPNFR 60
61 NLEKINQVKI NDLYTEEFLK EGK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.207 | a.3.1 | Cytochrome c |
| View | Download | 0.339 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.265 | a.28.1 | ACP-like |
| View | Download | 0.203 | d.222.1 | YbaB-like |
| View | Download | 0.334 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
