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Protein Overview: PRP39_YEAST

General Information:
Name(s) found: PRP39_YEAST [Swiss-Prot]
Description(s) found:
  • Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 629 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDETNFTIE DIEPRPDALR GLDTQFLQDN TALVQAYRGL DWSDISSLTQ MVDVIEQTVV  60
   61 KYGNPNDSIK LALETILWQI LRKYPLLFGF WKRFATIEYQ LFGLKKSIAV LATSVKWFPT 120
  121 SLELWCDYLN VLCVNNPNET DFIRNNFEIA KDLIGKQFLS HPFWDKFIEF EVGQKNWHNV 180
  181 QRIYEYIIEV PLHQYARFFT SYKKFLNEKN LKTTRNIDIV LRKTQTTVNE IWQFESKIKQ 240
  241 PFFNLGQVLN DDLENWSRYL KFVTDPSKSL DKEFVMSVFD RCLIPCLYHE NTWMMYIKWL 300
  301 TKKNISDEVV VDIYQKANTF LPLDFKTLRY DFLRFLKRKY RSNNTLFNNI FNETVSRYLK 360
  361 IWPNDILLMT EYLCMLKRHS FKNSLDQSPK EILEKQTSFT KILETSITNY INNQIDAKVH 420
  421 LQTLINDKNL SIVVVELIKT TWLVLKNNMQ TRKYFNLYQK NILIKNSVPF WLTYYKFEKS 480
  481 NVNFTKLNKF IRELGVEIYL PTTVMNDILT DYKTFYLTHS NIVTYESSII DSNTFDPILY 540
  541 PELKMSNPKY DPVLNTTANV DWHKKTEWKE AGHIGITTER PQISNSIIEC NSGTLIQKPI 600
  601 SLPNFRNLEK INQVKINDLY TEEFLKEGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..64] deduced N/A No confident structure predictions are available.
    2 View Details [65..209] PSI-BLAST 18.221849 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    3 View Details [210..270] PSI-BLAST 18.221849 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    4 View Details [271..353] PSI-BLAST 18.221849 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    5 View Details [354..411] PSI-BLAST 7.0 Cyclophilin 40; Cyclophilin 40 isomerase domain
    6 View Details [412..546] PSI-BLAST 7.0 Cyclophilin 40; Cyclophilin 40 isomerase domain
    7 View Details [547..629] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  2.76684454218635 bayes_pls_golite062009
  • binding
    		•  2.71974493738804 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.96129657517284 bayes_pls_golite062009
  • protein binding
    		•  1.6279032205159 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.62783430593918 bayes_pls_golite062009
  • DNA binding
    		•  1.62663906748938 bayes_pls_golite062009
  • transcription factor activity
    		•  0.934706586922936 bayes_pls_golite062009
  • signal sequence binding
    		•  0.8574224889202 bayes_pls_golite062009
  • transcription factor binding
    		•  0.441518464573089 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.19094857768269 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle