Protein: | NUP2 |
Organism: | Saccharomyces cerevisiae |
Length: | 720 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP2.
Description | E-value | Query Range |
Subject Range |
|
2.0E-70 | [205..717] | [1436..1981] |
|
5.0E-68 | [237..717] | [733..1168] |
|
2.0E-64 | [205..717] | [452..997] |
|
8.0E-63 | [1..720] | [1..720] |
|
2.0E-62 | [5..717] | [1380..2144] |
|
8.0E-54 | [160..719] | [303..905] |
Region A: Residues: [1-149] |
1 11 21 31 41 51 | | | | | | 1 MAKRVADAQI QRETYDSNES DDDVTPSTKV ASSAVMNRRK IAMPKRRMAF KPFGSAKSDE 60 61 TKQASSFSFL NRADGTGEAQ VDNSPTTESN SRLKALNLQF KAKVDDLVLG KPLADLRPLF 120 121 TRYELYIKNI LEAPVKSIEN PTQTKGNDA |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [150-273] |
1 11 21 31 41 51 | | | | | | 1 KPAKVEDVQK SSDSSSEDEV KVEGPKFTID AKPPISDSVF SFGPKKENRK KDESDSENDI 60 61 EIKGPEFKFS GTVSSDVFKL NPSTDKNEKK TETNAKPFSF SSATSTTEQT KSKNPLSLTE 120 121 ATKT |
Detection Method: | |
Confidence: | 14.0 |
Match: | 1m2vB |
Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [274-279] |
1 11 21 31 41 51 | | | | | | 1 NVDNNS |
Region B: Residues: [505-585] |
1 11 21 31 41 51 | | | | | | 1 EDVKKPFSFG TSQPNNTPSF SFGKTTANLP ANSSTSPAPS IPSTGFKFSL PFEQKGSQTT 60 61 TNDSKEESTT EATGNESQDA T |
Detection Method: | |
Confidence: | 11.01 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Region A: Residues: [280-352] |
1 11 21 31 41 51 | | | | | | 1 KAEASFTFGT KHAADSQNNK PSFVFGQAAA KPSLEKSSFT FGSTTIEKKN DENSTSNSKP 60 61 EKSSDSNDSN PSF |
Detection Method: | |
Confidence: | 11.01 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Region A: Residues: [353-434] |
1 11 21 31 41 51 | | | | | | 1 SFSIPSKNTP DASKPSFSFG VPNSSKNETS KPVFSFGAAT PSAKEASQED DNNNVEKPSS 60 61 KPAFNLISNA GTEKEKESKK DS |
Detection Method: | |
Confidence: | 11.01 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Term | Confidence | Notes |
binding | 3.29080729281876 | bayes_pls_golite062009 |
protein binding | 2.12168271674167 | bayes_pls_golite062009 |
transcription regulator activity | 2.10584700564436 | bayes_pls_golite062009 |
nucleic acid binding | 1.85794418941003 | bayes_pls_golite062009 |
DNA binding | 1.77960272183811 | bayes_pls_golite062009 |
cytoskeletal protein binding | 1.57773829313464 | bayes_pls_golite062009 |
actin binding | 1.43502308486445 | bayes_pls_golite062009 |
transporter activity | 1.28986800087234 | bayes_pls_golite062009 |
signal transducer activity | 1.15625292719687 | bayes_pls_golite062009 |
molecular transducer activity | 1.15625292719687 | bayes_pls_golite062009 |
Ran GTPase binding | 1.07023555877478 | bayes_pls_golite062009 |
RNA binding | 0.970967965545589 | bayes_pls_golite062009 |
substrate-specific transporter activity | 0.79883446648737 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 0.719838770435905 | bayes_pls_golite062009 |
receptor activity | 0.369903612832044 | bayes_pls_golite062009 |
hydrolase activity | 0.354215977182915 | bayes_pls_golite062009 |
protein domain specific binding | 0.18356841109571 | bayes_pls_golite062009 |
structural molecule activity | 0.160152014803717 | bayes_pls_golite062009 |
transmembrane receptor activity | 0.159652062741581 | bayes_pls_golite062009 |
pyrophosphatase activity | 0.0611639610381174 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 0.0524559849408587 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0498422520006935 | bayes_pls_golite062009 |
Region A: Residues: [435-504] |
1 11 21 31 41 51 | | | | | | 1 KPAFSFGISN GSESKDSDKP SLPSAVDGEN DKKEATKPAF SFGINTNTTK TADTKAPTFT 60 61 FGSSALADNK |
Detection Method: | |
Confidence: | 11.01 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Region A: Residues: [586-720] |
1 11 21 31 41 51 | | | | | | 1 KVDATPEESK PINLQNGEED EVALFSQKAK LMTFNAETKS YDSRGVGEMK LLKKKDDPSK 60 61 VRLLCRSDGM GNVLLNATVV DSFKYEPLAP GNDNLIKAPT VAADGKLVTY IVKFKQKEEG 120 121 RSFTKAIEDA KKEMK |
Detection Method: | |
Confidence: | 134.190949 |
Match: | 1rrpB_ |
Description: | Nuclear pore complex protein Nup358 |
Matching Structure (courtesy of the PDB): |