| Protein: | CWC24 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 259 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CWC24.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-53 | [1..259] | [1..259] |
|
|
2.0E-53 | [8..258] | [48..321] |
|
|
6.0E-53 | [9..259] | [44..316] |
|
|
2.0E-48 | [3..259] | [43..337] |
|
|
4.0E-38 | [5..256] | [288..531] |
|
|
4.0E-37 | [2..259] | [43..314] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MFRKRLVNKS SSDEKNQKKR QKINFSEEKL VASDEEKGSS DLMSLAKSGN SRTLQLSHEN 60
61 EGKLQKKGED LDKYTLTVND DSTKEDLLNF ERKELAEKAK KRRPSDDNEL VLNMSGKNKR 120
121 LTKQINQPTN IRTTVLMDFQ PDVCKDYKQT GYCGYGDSCK FLHSRDDF
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [169-259] |
1 11 21 31 41 51
| | | | | |
1 KTGWKLNQEW NADKEDSKAV TLDLEKIPFK CTLCKEDYKS PVVTNCGHYF CGSCFAKDMK 60
61 KGTKCFICHK ETHGSAKVAS DLQKMLNKRK S
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 1rmd__ |
| Description: | V(D)J recombination activating protein 1 (RAG1), dimerization domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [186-259] |
1 11 21 31 41 51
| | | | | |
1 KAVTLDLEKI PFKCTLCKED YKSPVVTNCG HYFCGSCFAK DMKKGTKCFI CHKETHGSAK 60
61 VASDLQKMLN KRKS
|
| Detection Method: | |
| Confidence: | 15.30103 |
| Match: | 1rmdA |
| Description: | RAG1 DIMERIZATION DOMAIN |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 4.77196423114965 | bayes_pls_golite062009 | |
| RNA binding | 2.35680777511144 | bayes_pls_golite062009 |
| binding | 2.19426901055464 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 2.17320579037083 | bayes_pls_golite062009 |
| ligase activity | 2.11117401820312 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 2.10698039886692 | bayes_pls_golite062009 |
| transcription regulator activity | 1.62076236255768 | bayes_pls_golite062009 |
| protein binding | 1.34794206219054 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 1.22312570999194 | bayes_pls_golite062009 |
| nucleic acid binding | 1.22180889694654 | bayes_pls_golite062009 |
| DNA binding | 1.00346149950987 | bayes_pls_golite062009 |
| transcription factor binding | 0.39685947299825 | bayes_pls_golite062009 |
| transcription factor activity | 0.382098789505496 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
