| Protein: | UBR2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1872 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBR2.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [64..1467] | [88..1409] |
|
|
0.0 | [65..1447] | [80..1398] |
|
|
0.0 | [10..1440] | [19..1430] |
|
|
0.0 | [94..1372] | [12..1266] |
|
|
0.0 | [454..1381] | [341..1224] |
|
|
0.0 | [446..1419] | [573..1532] |
|
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0.0 | [604..1390] | [1..762] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MEDSDLSITN IRDFLTELPK LAKCEYSETT SYLLWKTLNL RLKHSDNDIN WRSLVSILNS 60
61 EAWENEKYRD ILNGRKWRTL E
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.786 | a.74.1 | Cyclin-like |
| View | Download | 0.872 | a.64.1 | Saposin |
| View | Download | 0.761 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.862 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.905 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.872 | a.64.1 | Saposin |
| View | Download | 0.862 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.786 | a.74.1 | Cyclin-like |
| View | Download | 0.761 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.689 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.626 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.623 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.595 | a.4.1 | Homeodomain-like |
| View | Download | 0.560 | b.36.1 | PDZ domain-like |
| View | Download | 0.551 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.533 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.443 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.406 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.392 | a.74.1 | Cyclin-like |
| View | Download | 0.392 | a.28.1 | ACP-like |
| View | Download | 0.387 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.374 | a.39.1 | EF-hand |
| View | Download | 0.366 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.358 | a.22.1 | Histone-fold |
| View | Download | 0.356 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.355 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.354 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.341 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.336 | a.22.1 | Histone-fold |
| View | Download | 0.329 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.326 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.323 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.322 | a.39.1 | EF-hand |
| View | Download | 0.322 | d.102.1 | Regulatory factor Nef |
| View | Download | 0.316 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.316 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.313 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.307 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.303 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.294 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.294 | a.39.1 | EF-hand |
| View | Download | 0.293 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.289 | a.5.2 | UBA-like |
| View | Download | 0.285 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.282 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.274 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.269 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.259 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.257 | a.39.1 | EF-hand |
| View | Download | 0.257 | a.4.1 | Homeodomain-like |
| View | Download | 0.254 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.248 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.247 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.247 | a.26.1 | 4-helical cytokines |
| View | Download | 0.238 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.237 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.233 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.230 | a.43.1 | Met repressor-like |
| View | Download | 0.226 | a.4.1 | Homeodomain-like |
| View | Download | 0.223 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.223 | a.126.1 | Serum albumin-like |
| View | Download | 0.221 | a.21.1 | HMG-box |
| View | Download | 0.220 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.216 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.213 | a.74.1 | Cyclin-like |
| View | Download | 0.212 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.210 | a.61.1 | Retroviral matrix proteins |
|
Region A: Residues: [82-173] |
1 11 21 31 41 51
| | | | | |
1 FENDHHSVGN MHIGTACTRL CFPSETIYYC FTCSTNPLYE ICELCFDKEK HVNHSYVAKV 60
61 VMRPEGRICH CGDPFAFNDP SDAFKCKNEL NN
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| Detection Method: | |
| Confidence: | 32.958607 |
| Match: | PF02207 |
| Description: | Putative zinc finger in N-recognin |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.253 | N/A | N/A | d.93.1 | SH2 domain |
|
Region A: Residues: [174-713] |
1 11 21 31 41 51
| | | | | |
1 IPISNDNSNV TDDENVISLL NYVLDFLIDV TVSYKEEAEA HSSERKASSL MHPNQNSITD 60
61 DIMEKHECEP LVNDENFVFF DNNWSNTRKE AHMEWAIQIE EEECNVHYMD LASTITRILN 120
121 TPVEYAISIT KALEDSHDVV TVLQSENFFE IDQIAKEFQK ENIVVHVRKA DDIFKRKLTD 180
181 DLTDWLYSLC FKAATSLQNK YALRISMLDV WYSHFSKMRV SPTNTNPDFS KINLLGGFLI 240
241 SNEDSDESWF KPWSLENIED ERISKILTNY NERLIRAHSP NTVSHFYNFY GSRFQYIIIN 300
301 SINILSKKSK FKMLKIMASL FSLRDESRKF LAAQYIDVYL SVLYDAVASD AKECQVTLMS 360
361 ILGQYTFQDP SIANMTISSG FIERTIRFAF TLMAFNPEDL MSYLPISLYN GFKLPTETIR 420
421 NRRTIICFKD LCTIMSANTV PEELLSNEAI FNAIIESFSE FSNVLPLKRE TKEHVEVENF 480
481 DFSAFYFFFS SILIMTDGYT RSISLVKDAA FRKQIVLKLL DVAQTREFES LTNSRKAISP 540
541
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [714-1270] |
1 11 21 31 41 51
| | | | | |
1 DNASTNENDS NKATLSTVRE TICNYVAETI NFQVGVNTQY FFNPMSYLFK FVIQWSQCGR 60
61 YEPIPASLTN YINLFEVFQD KQKALYISES ALSTLVLIGQ INVGFWVRNG TPITHQARMY 120
121 TKYSMREFTY ISDIFNVQFS MAMCNPDELM VTYLSRWGLK HWANGVPMYD YPDTETTVAV 180
181 VNECILLLIQ LLTEVRSLVM KSSKEGFERT FKSEIIHALC FDTCSYAQIV NCIPEHITKH 240
241 PSFDIYLEKY ANYTSPVSLT DNGIFVLKEK YKDEIDPYYI GLSSSRRYDV EKNIRLNMAN 300
301 LKKMKYEDTF VPAKKVKDLL KNTLFSGLYS ISSVNTFGLF LKNTLDHIIK YDYDNLLPRV 360
361 VHLIHLCVVN NLNEFMGILW HEYAIVDTEF CHYHSIGSIL YYCLLKDNFS ESHGKIREIF 420
421 RYLMETAPHV NVNSYLREQT TSYTPGILWP TKEDKSHKDK EFERKKHLAR LRKKKLMKKL 480
481 AQQQMKFMEN NSVDTSDIST PRTTSPSLSP TRINAENSSN TINSCCDDDC VFCKMPKDDD 540
541 VFVYFSYQER NICDHGI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1271-1570] |
1 11 21 31 41 51
| | | | | |
1 DFTNPTDVNR INSLFSGKQT KDSAIQENPQ DDDGTRLKFT SCEPVLRACG HGSHTKCLSG 60
61 HMKSIRGIQN QTTKNIPLSY GSGLIYCPVC NSLSNSFLPK TNDIDKRTSS QFFMCIEKRS 120
121 EAEENLDPMS SICIKAAMIL GDLQGKKVTT IEDAYKVVNS VFINTISNTE LRLRSHKKEG 180
181 KIVNMERISS QCILTLHLVC ELKSFIYKKF VNSKTFSSEI SRKIWNWNEF LIKGNNVNLL 240
241 LYMSQNFDNI DGGKTPQPPN LCIYEMFKRR FHQLLLLLAR DMMRVNFYKD CRNKIKISSN 300
301
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1571-1872] |
1 11 21 31 41 51
| | | | | |
1 GSEEPSTSFS YLFNTFKKYV DLFKPDDVRF DFTSLEKIKD FICSLLLESL SIFCRRTFLL 60
61 FNIQYDDDGD GDNNNNRSNN FMDVKQREIE LIFRYFKLPN LTHFLKDFFY NELTQNIERY 120
121 NDGNDNLRIQ QVIYDMVQNI NTRAYPSPEH IQLIELPLNL SKFSLDNDEI SNKCDKYEIA 180
181 VCLLCGQKCH IQKSIALQGY LQGECTDHMR NGCEITSAYG VFLMTGTNAI YLSYGKRGTF 240
241 YAAPYLSKYG ETNEDYKFGT PVYLNRARYA NLANEIVFGN MIPHIVFRLT DGSADLGGWE 300
301 TM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| nucleic acid binding | 2.23450316335876 | bayes_pls_golite062009 |
| binding | 2.14387047687719 | bayes_pls_golite062009 |
| DNA binding | 2.04297552772596 | bayes_pls_golite062009 |
| transcription regulator activity | 2.02735936435983 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.32633588604151 | bayes_pls_golite062009 |
| transcription factor activity | 1.26194702122873 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.15892915621711 | bayes_pls_golite062009 |
| protein binding | 0.863483803868456 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.74103129816245 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.201004090113231 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.111186019165274 | bayes_pls_golite062009 |
|
Region A: Residues: [1017-1169] |
1 11 21 31 41 51
| | | | | |
1 MKYEDTFVPA KKVKDLLKNT LFSGLYSISS VNTFGLFLKN TLDHIIKYDY DNLLPRVVHL 60
61 IHLCVVNNLN EFMGILWHEY AIVDTEFCHY HSIGSILYYC LLKDNFSESH GKIREIFRYL 120
121 METAPHVNVN SYLREQTTSY TPGILWPTKE DKS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1170-1375] |
1 11 21 31 41 51
| | | | | |
1 HKDKEFERKK HLARLRKKKL MKKLAQQQMK FMENNSVDTS DISTPRTTSP SLSPTRINAE 60
61 NSSNTINSCC DDDCVFCKMP KDDDVFVYFS YQERNICDHG IDFTNPTDVN RINSLFSGKQ 120
121 TKDSAIQENP QDDDGTRLKF TSCEPVLRAC GHGSHTKCLS GHMKSIRGIQ NQTTKNIPLS 180
181 YGSGLIYCPV CNSLSNSFLP KTNDID
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1376-1576] |
1 11 21 31 41 51
| | | | | |
1 KRTSSQFFMC IEKRSEAEEN LDPMSSICIK AAMILGDLQG KKVTTIEDAY KVVNSVFINT 60
61 ISNTELRLRS HKKEGKIVNM ERISSQCILT LHLVCELKSF IYKKFVNSKT FSSEISRKIW 120
121 NWNEFLIKGN NVNLLLYMSQ NFDNIDGGKT PQPPNLCIYE MFKRRFHQLL LLLARDMMRV 180
181 NFYKDCRNKI KISSNGSEEP S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1577-1714] |
1 11 21 31 41 51
| | | | | |
1 TSFSYLFNTF KKYVDLFKPD DVRFDFTSLE KIKDFICSLL LESLSIFCRR TFLLFNIQYD 60
61 DDGDGDNNNN RSNNFMDVKQ REIELIFRYF KLPNLTHFLK DFFYNELTQN IERYNDGNDN 120
121 LRIQQVIYDM VQNINTRA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1715-1872] |
1 11 21 31 41 51
| | | | | |
1 YPSPEHIQLI ELPLNLSKFS LDNDEISNKC DKYEIAVCLL CGQKCHIQKS IALQGYLQGE 60
61 CTDHMRNGCE ITSAYGVFLM TGTNAIYLSY GKRGTFYAAP YLSKYGETNE DYKFGTPVYL 120
121 NRARYANLAN EIVFGNMIPH IVFRLTDGSA DLGGWETM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
