| Protein: | ASH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 588 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASH1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..588] | [1..588] |
|
|
1.0E-52 | [220..563] | [361..728] |
|
|
3.0E-52 | [220..563] | [361..728] |
|
|
3.0E-42 | [330..580] | [9..263] |
|
|
2.0E-41 | [220..563] | [366..731] |
|
|
6.0E-39 | [220..563] | [342..707] |
|
|
5.0E-38 | [308..580] | [30..342] |
|
Region A: Residues: [1-236] |
1 11 21 31 41 51
| | | | | |
1 MSSLYIKTPL HALSAGPDSH ANSSYYDNLL LPSFSNLSSN ISRNNITTDN NINSASPRKY 60
61 SFHSLNVSPI LSPISLANEI LGKKSNTAPA SPHHMDYNPI SSLTPGNSPE FNKASLSQIS 120
121 FTNPLNYGSG LGFSSNSQPR LPLLDRLSSV SLSKRPERPQ QSLPSLRHLQ LLPSPLLQEN 180
181 AARFPDTSKR TSNWKTDLTH WCKDTNYQDY VKIREEVAHF KPLSIPNLTN NQNNDS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [237-475] |
1 11 21 31 41 51
| | | | | |
1 FNYGKELEST RSSKFHSPSK ESFDRTKLIP SILEAKDQFK DLSNNAWSIT PPVTPPMSPP 60
61 TNRTMERTTL RGVEASFFEG KSSNNDSIFN PIISEKLVQE VKHQRQLRGN SFPMPNASHK 120
121 KTNSFKALQI KKLLANRDIL SNNSKSNVRK PSKNKISKQA SNVFGNTARQ LVMKLDNASY 180
181 SSVSASSSPS PSTPTKSGKM RSRSSSPVRP KAYTPSPRSP NYHRFALDSP PQSPRRSSN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [476-588] |
1 11 21 31 41 51
| | | | | |
1 SSITKKGSRR SSGSSPTRHT TRVCVSCHSS DSPCWRPSWS PRKQDQLCNS CGLRYKKTHT 60
61 RCLNDLCRKI PTKGEINIMK SNGIDKEFVP ERNCEIEGYR CLFCNYITET VEN
|
| Detection Method: | |
| Confidence: | 14.221849 |
| Match: | 4gatA_ |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.55186574506963 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| transcription repressor activity | 1.88834375049208 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.62841402245495 | bayes_pls_golite062009 |
| transcription activator activity | 1.62405765585032 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| protein binding | 1.39455913713025 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.14370842685155 | bayes_pls_golite062009 |
| structural molecule activity | 1.03433454627943 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.61572149323953 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.405267736307896 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
