| Protein: | DHR2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 735 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHR2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [13..735] | [69..777] |
|
|
0.0 | [56..735] | [36..704] |
|
|
0.0 | [5..729] | [455..1161] |
|
|
0.0 | [19..735] | [2..710] |
|
|
0.0 | [1..728] | [630..1355] |
|
Region A: Residues: [1-487] |
1 11 21 31 41 51
| | | | | |
1 MAANSNSRVA SNHTSKKQKV RRNIHPFTNN TRIKRASKIV KFNDSGEGDH VSDQRSNKEN 60
61 VLTYKSLKSR ASDLLKMRET LPVYQHKREI MSYIESNPVT VLIGETGSGK STQIPQFVLE 120
121 KLYDTKKHGS IAVTQPRRVA AINLATRVAQ EHGCKLGEQV GYSVRFDNTT TTRTRLKYLT 180
181 DGMLLRELMM NSDLREYSVI VIDEAHERTV LTDLILGFLK SLIQGPRPDL RIIVMSATLQ 240
241 AEKFSEFFNN APILFVEGRK FDVKQYYLKA PTDDIVDAVI RCCIQINQGE ELGDILCFLP 300
301 GQEEIDKAVT IMEKIAKYVS DEAPVPLIVP YPLYAALPAV QQSLVFAPIK GFKRKVVFST 360
361 NIAETSVTIS GVKFVVDSGL RKVKVWRHQL GLATLLTVPI SQASAMQRSG RAGRESEGKS 420
421 FRLYCESDYV KLPKQSEPEI ARSDVTSPVL MLKRYGVDDL LNWTWFENPG KEAIVMGLQE 480
481 LYELGAL
|
| Detection Method: |  |
| Confidence: | 75.30103 |
| Match: | 1fuuA_ |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 4.704140727858 | bayes_pls_golite062009 | |
| binding | 2.44689197844883 | bayes_pls_golite062009 |
| RNA binding | 2.29590582680214 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.57653963868443 | bayes_pls_golite062009 |
| RNA helicase activity | 1.42791449104435 | bayes_pls_golite062009 |
| nucleic acid binding | 1.41477043612798 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.39335733374328 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.36724390116598 | bayes_pls_golite062009 |
| DNA binding | 1.11699929651302 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription regulator activity | 0.989226939888218 | bayes_pls_golite062009 |
| mRNA binding | 0.76699944561918 | bayes_pls_golite062009 |
| helicase activity | 0.6191010101321 | bayes_pls_golite062009 |
| motor activity | 0.61636596887462 | bayes_pls_golite062009 |
| structural molecule activity | 0.596382945962261 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.461763181659193 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.458831409927227 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.455976987338331 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.422944846459286 | bayes_pls_golite062009 |
| snRNA binding | 0.418985924846052 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.338958888186454 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| translation release factor activity | 0.178286731022211 | bayes_pls_golite062009 |
| translation termination factor activity | 0.151456842619444 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| protein binding | 0.071010918255742 | bayes_pls_golite062009 |
| transcription factor activity | 0.0434163635422169 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0272673919333979 | bayes_pls_golite062009 |
|
Region A: Residues: [488-544] |
1 11 21 31 41 51
| | | | | |
1 DTRGKITKRG QQMALLPLQP HLSSVLIKAS EVGCLSQVID IVSCLSVENL LLNPSPE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.443 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.651 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.514 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.414 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.321 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.307 | a.5.2 | UBA-like |
| View | Download | 0.298 | a.5.2 | UBA-like |
| View | Download | 0.296 | a.5.2 | UBA-like |
| View | Download | 0.271 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.247 | a.140.1 | LEM domain |
| View | Download | 0.235 | a.56.1 | CO dehydrogenase ISP C-domain like |
|
Region A: Residues: [545-735] |
1 11 21 31 41 51
| | | | | |
1 ERDEVNERRL SLCNAGKRYG DLIMLKELFD IYFYELGKSQ DASSERNDWC KGLCISIRGF 60
61 KNVIRVRDQL RVYCKRLFSS ISEEDEESKK IGEDGELISK ILKCFLTGFI KNTAIGMPDR 120
121 SYRTVSTGEP ISIHPSSMLF MNKSCPGIMY TEYVFTTKGY ARNVSRIELS WLQEVVTNAA 180
181 AVAKQKVSDS K
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
