| Protein: | BYE1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 594 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BYE1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..594] | [1..594] |
|
|
5.0E-61 | [5..390] | [221..629] |
|
|
4.0E-60 | [15..439] | [659..1119] |
|
|
3.0E-57 | [141..390] | [16..283] |
|
|
5.0E-57 | [137..390] | [13..287] |
|
|
8.0E-57 | [141..390] | [16..283] |
|
Region A: Residues: [1-193] |
1 11 21 31 41 51
| | | | | |
1 MSVRTSSRSN KGQNKYIEYL LQEETEAPKK KRTKKKVDSA IEKNKKSDSS QEPRKDTENV 60
61 RTDEVDEADE GYVRCLCGAN NENYDAAEYS HGDMVQCDGC DTWQHIKCMT DGKDTIDGLM 120
121 SEDSKYYCEL CDPSLYAHLE TSKEAEVSED EDYHDDVYKP VNDHDDNDAD VFLDEESPRK 180
181 RKRSPDSAKG IHI
|
| Detection Method: |  |
| Confidence: | 8.12 |
| Match: | 1fp0A |
| Description: | Nuclear corepressor KAP-1 (TIF-1beta) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.93415748500038 | bayes_pls_golite062009 |
| transcription regulator activity | 2.89424169822343 | bayes_pls_golite062009 |
| DNA binding | 2.67786232715949 | bayes_pls_golite062009 |
| nucleic acid binding | 2.6327300364647 | bayes_pls_golite062009 |
| transcription repressor activity | 2.13907615882531 | bayes_pls_golite062009 |
| transcription factor activity | 1.62385700361588 | bayes_pls_golite062009 |
| protein binding | 1.42349040268084 | bayes_pls_golite062009 |
| chromatin binding | 1.04248905371583 | bayes_pls_golite062009 |
| transcription activator activity | 0.739132967687069 | bayes_pls_golite062009 |
| histone binding | 0.34407565577548 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0725773086825168 | bayes_pls_golite062009 |
| transcription factor binding | 0.0538806851320555 | bayes_pls_golite062009 |
|
Region A: Residues: [194-254] |
1 11 21 31 41 51
| | | | | |
1 KSKQVKKSNG SKKRNKSIDA AKSDTAENEM PTRKDFESEK EHKLRYNAEK MFSTLFSKFI 60
61 V
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [255-351] |
1 11 21 31 41 51
| | | | | |
1 PETIEAKLYE LPDGKDVISI SQEFAHNLEE ELYKACLNVE FGTLDKIYTE KVRSLYSNLK 60
61 DKKNLELKAH VVEGKLPLNK LVNMNASELA NPDLQEF
|
| Detection Method: | |
| Confidence: | 16.30103 |
| Match: | 1enwA_ |
| Description: | Elongation factor TFIIS domain 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 3.54473441396096 | bayes_pls_golite062009 |
| nucleic acid binding | 3.48558304847931 | bayes_pls_golite062009 |
| transcription regulator activity | 2.99210735079034 | bayes_pls_golite062009 |
| binding | 2.41724497205118 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.05998863112202 | bayes_pls_golite062009 |
| promoter binding | 1.83726450182234 | bayes_pls_golite062009 |
| transcription repressor activity | 1.65986761464116 | bayes_pls_golite062009 |
| transcription activator activity | 1.38544336130022 | bayes_pls_golite062009 |
| transcription factor activity | 1.36469181687855 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.10125855381509 | bayes_pls_golite062009 |
| protein binding | 1.08484616730639 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.761344747515317 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.72942170277234 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.594929844028595 | bayes_pls_golite062009 |
| DNA helicase activity | 0.486136971288514 | bayes_pls_golite062009 |
| helicase activity | 0.409609667937952 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.364602306790165 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.323407552453846 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.311579649994958 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.311579649994958 | bayes_pls_golite062009 |
| catalytic activity | 0.284946544609129 | bayes_pls_golite062009 |
| transcription factor binding | 0.147270026435341 | bayes_pls_golite062009 |
|
Region A: Residues: [352-422] |
1 11 21 31 41 51
| | | | | |
1 KEKRDKIILE NFIVEVPDKP MYVKTHKGDE LIEDIAEPQE DILYSKDSIR LHNIDSIDSD 60
61 KSKIEQTHAI S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [423-594] |
1 11 21 31 41 51
| | | | | |
1 KEPSPSTIIN EESLNCAFLY PGLGLEFTGY LNYIGASQKL RRDIFKEAIG DGKLYVEGRL 60
61 PTTTAAPYLK EISCSRAILV YQLFPSNDSE SKTTFADVVD SLENKGRIAG IKPKTRYEKD 120
121 FYIVPSKGGE IPEILKDILG SHNDERSERF SRMKSDERTL FAFVVVKQEF IH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
