| Protein: | CBF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 351 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBF1.
| Description | E-value | Query Range |
Subject Range |
|
|
8.0E-58 | [1..351] | [1..351] |
|
|
6.0E-42 | [17..334] | [19..346] |
|
|
2.0E-41 | [17..334] | [19..346] |
|
|
2.0E-41 | [17..334] | [19..346] |
|
|
5.0E-38 | [17..334] | [19..319] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MNSLANNNKL STEDEEIHSA RKRGYNEEQN YSEARKKQRD QGLLSQESND GNIDSALLSE 60
61 GATLKGTQSQ YESGLTSNKD EKGSDDEDAS VAEAAVAATV NYTDLIQGQE DSSDAHTSNQ 120
121 TNANGEHKDS LNGERAITPS NEGVKPNTSL EGMTSSPMES TQQSKNDM
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [169-351] |
1 11 21 31 41 51
| | | | | |
1 LIPLAEHDRG PEHQQDDEDN DDADIDLKKD ISMQPGRRGR KPTTLATTDE WKKQRKDSHK 60
61 EVERRRRENI NTAINVLSDL LPVRESSKAA ILACAAEYIQ KLKETDEANI EKWTLQKLLS 120
121 EQNASQLASA NEKLQEELGN AYKEIEYMKR VLRKEGIEYE DMHTHKKQEN ERKSTRSDNP 180
181 HEA
|
| Detection Method: | |
| Confidence: | 11.522879 |
| Match: | 1hloA_ |
| Description: | Max protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 5.18654839258297 | bayes_pls_golite062009 |
| nucleic acid binding | 5.05768805749761 | bayes_pls_golite062009 |
| transcription factor activity | 4.78039531631248 | bayes_pls_golite062009 |
| transcription activator activity | 3.87875547821718 | bayes_pls_golite062009 |
| binding | 3.81829206350975 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.42035985454056 | bayes_pls_golite062009 |
| protein binding | 2.64975291677725 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 2.58879320178546 | bayes_pls_golite062009 |
| transcription repressor activity | 2.58751248599889 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.48787404513864 | bayes_pls_golite062009 |
| transcription corepressor activity | 2.03674713048499 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| promoter binding | 0.94414084000081 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.53175615551166 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
| protein dimerization activity | 0.20674648626116 | bayes_pls_golite062009 |
