| Protein: | PSF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 213 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSF2.
| Description | E-value | Query Range |
Subject Range |
|
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6.0E-80 | [1..213] | [1..213] |
|
|
3.0E-59 | [6..194] | [8..179] |
|
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2.0E-56 | [15..197] | [5..172] |
|
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2.0E-56 | [15..197] | [5..172] |
|
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3.0E-53 | [1..195] | [1..176] |
|
|
4.0E-49 | [13..199] | [15..187] |
|
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3.0E-46 | [14..185] | [4..161] |
|
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7.0E-45 | [12..195] | [4..168] |
|
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0.003 | [72..177] | [356..476] |
|
Region A: Residues: [1-115] |
1 11 21 31 41 51
| | | | | |
1 MSLPAHLQQT FSPEEIQFIV ENEPIKIFPR ITTRQKIRGD DRGTGNHTRW QLITTDDKAL 60
61 NNMVAMRSTE VVLWIALLLK QQSKCSIVAP QWLTTKELDR KIQYEKTHPD RFSEL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.523 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.201 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| Term | Confidence | Notes |
| 3'-5' DNA helicase activity | 3.30007058745861 | bayes_pls_golite062009 |
| DNA helicase activity | 2.7662250039458 | bayes_pls_golite062009 |
| binding | 1.71578680186328 | bayes_pls_golite062009 |
| transcription regulator activity | 1.2336233528067 | bayes_pls_golite062009 |
| helicase activity | 1.2110072302388 | bayes_pls_golite062009 |
| protein binding | 0.495328779211482 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.406116199163083 | bayes_pls_golite062009 |
| transcription elongation regulator activity | 0.37490315580617 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.350000641617868 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.33576520693158 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.333445385039412 | bayes_pls_golite062009 |
| catalytic activity | 0.161911144249814 | bayes_pls_golite062009 |
|
Region A: Residues: [116-213] |
1 11 21 31 41 51
| | | | | |
1 PWNWLVLARI LFNKAKDDFH DPIHELRGKI QDLREIRQIK VLKGLKYLNE SHLQLDNLSL 60
61 LEINELRPFI TEIMDKLREI HTASLTAGTE NDEEEFNI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.775 | 0.033 | DNA binding | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.760 | 0.004 | DNA-dependent DNA replication | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.754 | 0.003 | DNA-dependent DNA replication | a.2.7 | tRNA-binding arm |
| View | Download | 0.780 | N/A | N/A | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.684 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.674 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.661 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.643 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.580 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.567 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.557 | N/A | N/A | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.554 | N/A | N/A | a.60.2 | RuvA domain 2-like |
| View | Download | 0.547 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.539 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.516 | N/A | N/A | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.504 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.490 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.467 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.463 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.458 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.457 | N/A | N/A | d.2.1 | Lysozyme-like |
| View | Download | 0.453 | N/A | N/A | a.4.12 | TrpR-like |
| View | Download | 0.443 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.439 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.435 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.431 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.426 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.403 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.401 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.400 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.400 | N/A | N/A | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.390 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.382 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.376 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.369 | N/A | N/A | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.368 | N/A | N/A | d.68.4 | YhbY-like |
| View | Download | 0.365 | N/A | N/A | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.365 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.360 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.353 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.344 | N/A | N/A | a.42.1 | MDM2 |
| View | Download | 0.343 | N/A | N/A | g.53.1 | TAZ domain |
| View | Download | 0.325 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.322 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.322 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.321 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.321 | N/A | N/A | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.317 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.308 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.307 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.303 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.298 | N/A | N/A | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.293 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.292 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.291 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.290 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.288 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.282 | N/A | N/A | d.58.13 | Anticodon-binding domain of PheRS |
| View | Download | 0.275 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.275 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.274 | N/A | N/A | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.271 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.270 | N/A | N/A | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.266 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.261 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.259 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.255 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.253 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.252 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.252 | N/A | N/A | g.36.1 | Ferredoxin thioredoxin reductase (FTR), catalytic beta chain |
| View | Download | 0.246 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.244 | N/A | N/A | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.238 | N/A | N/A | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.237 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.237 | N/A | N/A | d.202.1 | Transcription factor NusA, N-terminal domain |
| View | Download | 0.236 | N/A | N/A | d.94.1 | HPr-like |
| View | Download | 0.232 | N/A | N/A | d.79.1 | YjgF-like |
| View | Download | 0.229 | N/A | N/A | a.11.2 | Second domain of FERM |
| View | Download | 0.228 | N/A | N/A | d.58.27 | Translational regulator protein regA |
| View | Download | 0.222 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.218 | N/A | N/A | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.217 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.216 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.215 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.214 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.214 | N/A | N/A | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.214 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.212 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.211 | N/A | N/A | d.109.2 | C-terminal, gelsolin-like domain of Sec23/24 |
| View | Download | 0.211 | N/A | N/A | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.203 | N/A | N/A | a.2.3 | Chaperone J-domain |
