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View Structure Prediction Details

Protein: GAT4
Organism: Saccharomyces cerevisiae
Length: 121 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAT4.

Description E-value Query
Range		 Subject
Range
GAT4 - Protein containing GATA family zinc finger motifs
GAT4_YEAST - Protein GAT4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAT4 PE=3 SV=1
gi|151943172 - gi|151943172|gb|EDN61507.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406210 - gi|190406210|gb|EDV09477.1| protein GAT4 [Saccharomyces cerevisiae RM11-1a]
 4.0E-22 [1..121] [1..121]
gi|7381420 - gi|7381420|gb|AAF61481.1|AF184154_1 zinc finger DNA binding protein pannier [Ceratitis capitata]
 3.0E-19 [28..118] [140..222]
GAT12_ARATH - GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1
 6.0E-19 [7..111] [171..280]
pnr-PA - The gene pannier is referred to in FlyBase by the symbol Dmel\pnr (CG3978, FBgn0003117). It is a pro...
 1.0E-18 [28..117] [198..282]
GAT5A_XENLA - GATA-binding factor 5-A OS=Xenopus laevis GN=gata5-a PE=2 SV=1
 4.0E-18 [28..119] [212..295]
gi|18032000 - gi|18032000|gb|AAL32068.1| pannier-like protein [Calliphora vicina]
 1.0E-17 [28..119] [152..238]

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Predicted Domain #1
Region A:
Residues: [1-121] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLPIVIS NGTAFKKVPV QLLLNSGSEA QHGLPRNADS QPARPRTGIT RTCGQCGEIK  60
   61 TSLQWREGPN GAACLCNACG LFFRKLILRF GRAAAKRYME QIKGTGTKRR IPKELTGTVR 120
  121 F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.39794
Match: 2gatA_
Description: Erythroid transcription factor GATA-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 4.00967542385368 bayes_pls_golite062009
binding 3.48726415487797 bayes_pls_golite062009
DNA binding 3.36252792779457 bayes_pls_golite062009
nucleic acid binding 3.05528938535257 bayes_pls_golite062009
transcription factor activity 2.70303114587416 bayes_pls_golite062009
transcription activator activity 1.62405765585032 bayes_pls_golite062009
sequence-specific DNA binding 1.5397618957429 bayes_pls_golite062009
RNA polymerase II transcription factor activity 1.50210964370113 bayes_pls_golite062009
transcription factor binding 1.38523780690867 bayes_pls_golite062009
ligand-dependent nuclear receptor activity 1.37025623768659 bayes_pls_golite062009
protein binding 1.19451874907667 bayes_pls_golite062009
transcription cofactor activity 0.58115018700114 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 0.57492522309817 bayes_pls_golite062009
transcription repressor activity 0.256420113528322 bayes_pls_golite062009
catalytic activity 0.101795606736461 bayes_pls_golite062009
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