| Protein: | HOP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 605 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..605] | [1..605] |
|
|
0.0 | [1..605] | [1..581] |
|
|
2.0E-82 | [1..302] | [1..281] |
|
|
2.0E-64 | [2..285] | [12..260] |
|
|
2.0E-63 | [1..283] | [1..270] |
|
Region A: Residues: [1-297] |
1 11 21 31 41 51
| | | | | |
1 MSNKQLVKPK TETKTEITTE QSQKLLQTML TMSFGCLAFL RGLFPDDIFV DQRFVPEKVE 60
61 KNYNKQNTSQ NNSIKIKTLI RGKSAQADLL LDWLEKGVFK SIRLKCLKAL SLGIFLEDPT 120
121 DLLENYIFSF DYDEENNVNI NVNLSGNKKG SKNADPENET ISLLDSRRMV QQLMRRFIII 180
181 TQSLEPLPQK KFLTMRLMFN DNVDEDYQPE LFKDATFDKR ATLKVPTNLD NDAIDVGTLN 240
241 TKHHKVALSV LSAATSSMEK AGNTNFIRVD PFDLILQQQE ENKLEESVPT KPQNFVT
|
| Detection Method: |  |
| Confidence: | 44.0 |
| Match: | 1klqA_ |
| Description: | The spindle assembly checkpoint protein mad2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.13055115474904 | bayes_pls_golite062009 |
| protein binding | 0.818584450437447 | bayes_pls_golite062009 |
|
Region A: Residues: [298-362] |
1 11 21 31 41 51
| | | | | |
1 SQTTNVLGNL LNSSQASIQP TQFVSNNPVT GICSCECGLE VPKAATVLKT CKSCRKTLHG 60
61 ICYGN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.828 | 0.118 | synaptonemal complex | d.58.17 | Metal-binding domain |
| Term | Confidence | Notes |
| binding | 2.84147289283175 | bayes_pls_golite062009 |
| histone binding | 2.18177552065219 | bayes_pls_golite062009 |
| protein binding | 1.32925779020231 | bayes_pls_golite062009 |
| transcription regulator activity | 1.0641566670887 | bayes_pls_golite062009 |
| DNA binding | 0.971448192185972 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.967231932888801 | bayes_pls_golite062009 |
| chromatin binding | 0.880691867408093 | bayes_pls_golite062009 |
| nucleic acid binding | 0.853862782088463 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.831882636066806 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.831882636066806 | bayes_pls_golite062009 |
| methylated histone residue binding | 0.635303636820801 | bayes_pls_golite062009 |
| transcription repressor activity | 0.592444465044507 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.326699327690106 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.290550172892431 | bayes_pls_golite062009 |
| DNA helicase activity | 0.290236218269237 | bayes_pls_golite062009 |
| transcription factor activity | 0.0935432513162235 | bayes_pls_golite062009 |
|
Region A: Residues: [363-605] |
1 11 21 31 41 51
| | | | | |
1 FLHSSIEKCF TCIFGPSLDT KWSKFQDLMM IRKVFRFLVR KKKGFPASIT ELIDSFINVE 60
61 DQNNEVKERV AFALFVFFLD ETLCLDNGGK PSQTIRYVTS SVLVDVKGIV IPNTRKQLNV 120
121 NHEYKWHFTT SSPKAESFYQ EVLPNSRKQV ESWLQDITNL RKVYSEALSP SSTLQELDLN 180
181 SSLPTQDPII SGQKRRRYDL DEYLEEDKSS VVNDTIKAKD FDESVPAKIR KISVSKKTLK 240
241 SNW
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
