| Protein: | NDT80 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 627 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDT80.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..627] | [1..627] |
|
|
1.0E-76 | [95..336] | [109..313] |
|
|
2.0E-76 | [95..336] | [129..333] |
|
Region A: Residues: [1-434] |
1 11 21 31 41 51
| | | | | |
1 MNEMENTDPV LQDDLVSKYE RELSTEQEED TPVILTQLNE DGTTSNYFDK RKLKIAPRST 60
61 LQFKVGPPFE LVRDYCPVVE SHTGRTLDLR IIPRIDRGFD HIDEEWVGYK RNYFTLVSTF 120
121 ETANCDLDTF LKSSFDLLVE DSSVESRLRV QYFAIKIKAK NDDDDTEINL VQHTAKRDKG 180
181 PQFCPSVCPL VPSPLPKHQI IREASNVRNI TKMKKYDSTF YLHRDHVNYE EYGVDSLLFS 240
241 YPEDSIQKVA RYERVQFASS ISVKKPSQQN KHFSLHVILG AVVDPDTFHG ENPGIPYDEL 300
301 ALKNGSKGMF VYLQEMKTPP LIIRGRSPSN YASSQRITVR TPSSVNSSQN STKRKMPSMA 360
361 QPLNESCLNA RPSKRRSKVA LGAPNSGASI SPIKSRQSTP MEASKENEDP FFRPNKRVET 420
421 LEHIQNKLGA LKNQ
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 5.42929256050781 | bayes_pls_golite062009 |
| DNA binding | 5.06641178315703 | bayes_pls_golite062009 |
| nucleic acid binding | 4.74995074999042 | bayes_pls_golite062009 |
| binding | 4.35229901672243 | bayes_pls_golite062009 |
| transcription factor activity | 4.30059567378483 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72947352424854 | bayes_pls_golite062009 |
| transcription activator activity | 2.56828839945617 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.23604897773023 | bayes_pls_golite062009 |
| protein binding | 1.90381218061757 | bayes_pls_golite062009 |
| transcription repressor activity | 1.27337392672914 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.18312413193055 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.15539761996001 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.952279913363481 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.75467711075231 | bayes_pls_golite062009 |
| transcription factor binding | 0.628837188707778 | bayes_pls_golite062009 |
| chromatin binding | 0.4119609397091 | bayes_pls_golite062009 |
|
Region A: Residues: [435-627] |
1 11 21 31 41 51
| | | | | |
1 CPDSSLKYPS SSSRGMEGCL EKEDLVYSSS FSVNMKQIEL KPARSFEHEN IFKVGSLAFK 60
61 KINELPHENY DITIEKKSME QNYLRPEIGS RSECKTSYGN ELSLSNISFS ILPNSAENFH 120
121 LETALFPATE EDVPRTFSRI LETGSFQNYY QKMDAENADR VYSKGVKLIA SGTLPSGIFN 180
181 REELFEEDSF YKY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.554 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.435 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.423 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.402 | a.26.1 | 4-helical cytokines |
| View | Download | 0.397 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
|
Region A: Residues: [524-627] |
1 11 21 31 41 51
| | | | | |
1 SRSECKTSYG NELSLSNISF SILPNSAENF HLETALFPAT EEDVPRTFSR ILETGSFQNY 60
61 YQKMDAENAD RVYSKGVKLI ASGTLPSGIF NREELFEEDS FYKY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.698 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.466 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.459 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.414 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.407 | a.77.1 | DEATH domain |
