| Protein: | RRM3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 723 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRM3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..723] | [1..723] |
|
|
1.0E-84 | [85..651] | [1143..1751] |
|
|
4.0E-81 | [142..722] | [219..784] |
|
|
4.0E-81 | [142..722] | [219..784] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MFRSHASGNK KQWSKRSSNG STPAASASGS HAYRQQTLSS FFMGCGKKSA AASKNSTTII 60
61 DLESGDEGNR NITAPPRPRL IRNN
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.452 | 0.131 | nuclear telomeric heterochromatin | d.58.17 | Metal-binding domain |
| View | Download | 0.425 | 0.025 | nuclear telomeric heterochromatin | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.387 | 0.015 | nuclear telomeric heterochromatin | d.68.4 | YhbY-like |
| View | Download | 0.357 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.350 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.336 | N/A | N/A | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.289 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.287 | N/A | N/A | d.58.49 | YajQ-like |
| View | Download | 0.281 | N/A | N/A | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.254 | N/A | N/A | d.17.1 | Cystatin/monellin |
| View | Download | 0.237 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.230 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.223 | N/A | N/A | a.4.1 | Homeodomain-like |
|
Region A: Residues: [85-145] |
1 11 21 31 41 51
| | | | | |
1 SSSLFSQSQG SFGDDDPDAE FKKLVDVPRL NSYKKSSRSL SMTSSLHKTA SASTTQKTYH 60
61 F
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.301 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.309 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.400 | a.64.1 | Saposin |
| View | Download | 0.449 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.281 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.265 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.239 | a.60.8 | HRDC-like |
| View | Download | 0.228 | d.64.1 | eIF1-like |
| View | Download | 0.215 | d.58.17 | Metal-binding domain |
| View | Download | 0.214 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.212 | a.4.1 | Homeodomain-like |
| View | Download | 0.201 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| Term | Confidence | Notes |
| DNA clamp loader activity | 3.94645534451735 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 3.91355858456767 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 3.38712979169347 | bayes_pls_golite062009 |
| DNA polymerase activity | 3.34317110957534 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| nucleic acid binding | 2.21184938313192 | bayes_pls_golite062009 |
| DNA binding | 1.94055378599526 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| transcription regulator activity | 1.83584389083042 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.81138802583782 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 1.66853770005159 | bayes_pls_golite062009 |
| RNA helicase activity | 1.63960194106079 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.61735400124552 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.60404584546501 | bayes_pls_golite062009 |
| telomeric DNA binding | 1.28350783207533 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.1110976601505 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.11103644113672 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.1086792521709 | bayes_pls_golite062009 |
| nucleotide binding | 1.1060655022247 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| ATP binding | 0.80197288940364 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.770085840885632 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.751575230566049 | bayes_pls_golite062009 |
| transcription factor activity | 0.697256579145077 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
| microtubule motor activity | 0.60036517876321 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.208665086324262 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
|
Region A: Residues: [146-226] |
1 11 21 31 41 51
| | | | | |
1 DEDETLREVT SVKSNSRQLS FTSTINIEDS SMKLSTDSER PAKRSKPSME FQGLKLTVPK 60
61 KIKPLLRKTV SNMDSMNHRS A
|
| Detection Method: | |
| Confidence: | 21.154902 |
| Match: | 1fts__ |
| Description: | Signal recognition particle receptor, FtsY; GTPase domain of the signal recognition particle receptor FtsY |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [227-723] |
1 11 21 31 41 51
| | | | | |
1 SSPVVLTMEQ ERVVNLIVKK RTNVFYTGSA GTGKSVILQT IIRQLSSLYG KESIAITAST 60
61 GLAAVTIGGS TLHKWSGIGI GNKTIDQLVK KIQSQKDLLA AWRYTKVLII DEISMVDGNL 120
121 LDKLEQIARR IRKNDDPFGG IQLVLTGDFF QLPPVAKKDE HNVVKFCFES EMWKRCIQKT 180
181 ILLTKVFRQQ DNKLIDILNA IRYGELTVDI AKTIRNLNRD IDYADGIAPT ELYATRREVE 240
241 LSNVKKLQSL PGDLYEFKAV DNAPERYQAI LDSSLMVEKV VALKEDAQVM MLKNKPDVEL 300
301 VNGSLGKVLF FVTESLVVKM KEIYKIVDDE VVMDMRLVSR VIGNPLLKES KEFRQDLNAR 360
361 PLARLERLKI LINYAVKISP HKEKFPYVRW TVGKNKYIHE LMVPERFPID IPRENVGLER 420
421 TQIPLMLCWA LSIHKAQGQT IQRLKVDLRR IFEAGQVYVA LSRAVTMDTL QVLNFDPGKI 480
481 RTNERVKDFY KRLETLK
|
| Detection Method: | |
| Confidence: | 63.045757 |
| Match: | 1pjr__ |
| Description: | DEXX box DNA helicase |
Matching Structure (courtesy of the PDB): |
|
