| Protein: | CWC22 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 577 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CWC22.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..577] | [1..577] |
|
|
0.0 | [1..490] | [399..912] |
|
|
0.0 | [1..492] | [171..687] |
|
|
0.0 | [1..495] | [103..618] |
|
|
0.0 | [1..494] | [342..855] |
|
|
0.0 | [1..480] | [173..677] |
|
Region A: Residues: [1-226] |
1 11 21 31 41 51
| | | | | |
1 MSTATIQDED IKFQRENWEM IRSHVSPIIS NLTMDNLQES HRDLFQVNIL IGRNIICKNV 60
61 VDFTLNKQNG RLIPALSALI ALLNSDIPDI GETLAKELML MFVQQFNRKD YVSCGNILQC 120
121 LSILFLYDVI HEIVILQILL LLLEKNSLRL VIAVMKICGW KLALVSKKTH DMIWEKLRYI 180
181 LQTQELSSTL RESLETLFEI RQKDYKSGSQ GLFILDPTSY TVHTHS
|
| Detection Method: |  |
| Confidence: | 45.0 |
| Match: | 1hu3A_ |
| Description: | Eukaryotic initiation factor eIF4G |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.20683443264388 | bayes_pls_golite062009 |
| mRNA binding | 2.49094746544717 | bayes_pls_golite062009 |
| binding | 2.47395644967726 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64539435934931 | bayes_pls_golite062009 |
| structural molecule activity | 1.39201458088376 | bayes_pls_golite062009 |
| transcription regulator activity | 1.06250847754412 | bayes_pls_golite062009 |
| protein binding | 1.04044934052933 | bayes_pls_golite062009 |
| DNA binding | 0.946847037737779 | bayes_pls_golite062009 |
| RNA cap binding | 0.66277586901495 | bayes_pls_golite062009 |
| transcription factor activity | 0.362911773502049 | bayes_pls_golite062009 |
|
Region A: Residues: [227-300] |
1 11 21 31 41 51
| | | | | |
1 YIVSDEDEAN KELGNFEKCE NFNELTMAFD TLRQKLLINN TSDTNEGSNS QLQIYDMTST 60
61 NDVEFKKKIY LVLK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| RNA binding | 4.05046860305563 | bayes_pls_golite062009 |
| binding | 2.36800795249393 | bayes_pls_golite062009 |
| mRNA binding | 2.35042158577052 | bayes_pls_golite062009 |
| nucleic acid binding | 1.59410102249793 | bayes_pls_golite062009 |
| structural molecule activity | 1.3916221897201 | bayes_pls_golite062009 |
| transcription regulator activity | 1.08645493064764 | bayes_pls_golite062009 |
| DNA binding | 0.956143892328242 | bayes_pls_golite062009 |
| protein binding | 0.914877292844892 | bayes_pls_golite062009 |
| transcription factor activity | 0.371244009721798 | bayes_pls_golite062009 |
| RNA cap binding | 0.357520253345298 | bayes_pls_golite062009 |
|
Region A: Residues: [301-514] |
1 11 21 31 41 51
| | | | | |
1 SSLSGDEAAH KLLKLKIANN LKKSVVDIII KSSLQESTFS KFYSILSERM ITFHRSWQTA 60
61 YNETFEQNYT QDIEDYETDQ LRILGKFWGH LISYEFLPMD CLKIIKLTEE ESCPQGRIFI 120
121 KFLFQELVNE LGLDELQLRL NSSKLDGMFP LEGDAEHIRY SINFFTAIGL GLLTEDMRSR 180
181 LTIIQEVEDA EEEEKKLREE EELEKLRKKA RESQ
|
| Detection Method: | |
| Confidence: | 7.46 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [515-577] |
1 11 21 31 41 51
| | | | | |
1 PTQGPKIHES RLFLQKDTRE NSRSRSPFTV ETRKRARSRT PPRGSRNHRN RSRTPPARRQ 60
61 RHR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
