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Protein Overview: CWC22_YEAST

General Information:
Name(s) found: CWC22_YEAST [Swiss-Prot]
Description(s) found:
  • Pre-mRNA-splicing factor CWC22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC22 PE=1 SV=1 [Swiss-Prot]
    • Organism: Saccharomyces cerevisiae S288c
    Length: 577 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTATIQDED IKFQRENWEM IRSHVSPIIS NLTMDNLQES HRDLFQVNIL IGRNIICKNV  60
   61 VDFTLNKQNG RLIPALSALI ALLNSDIPDI GETLAKELML MFVQQFNRKD YVSCGNILQC 120
  121 LSILFLYDVI HEIVILQILL LLLEKNSLRL VIAVMKICGW KLALVSKKTH DMIWEKLRYI 180
  181 LQTQELSSTL RESLETLFEI RQKDYKSGSQ GLFILDPTSY TVHTHSYIVS DEDEANKELG 240
  241 NFEKCENFNE LTMAFDTLRQ KLLINNTSDT NEGSNSQLQI YDMTSTNDVE FKKKIYLVLK 300
  301 SSLSGDEAAH KLLKLKIANN LKKSVVDIII KSSLQESTFS KFYSILSERM ITFHRSWQTA 360
  361 YNETFEQNYT QDIEDYETDQ LRILGKFWGH LISYEFLPMD CLKIIKLTEE ESCPQGRIFI 420
  421 KFLFQELVNE LGLDELQLRL NSSKLDGMFP LEGDAEHIRY SINFFTAIGL GLLTEDMRSR 480
  481 LTIIQEVEDA EEEEKKLREE EELEKLRKKA RESQPTQGPK IHESRLFLQK DTRENSRSRS 540
  541 PFTVETRKRA RSRTPPRGSR NHRNRSRTPP ARRQRHR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 45.0 Eukaryotic initiation factor eIF4G
    2 View Details [227..300] deduced N/A No confident structure predictions are available.
    3 View Details [301..514] ORFEUS 7.46 CBP80, 80KDa nuclear cap-binding protein
    4 View Details [515..577] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  4.20683443264388 bayes_pls_golite062009
  • mRNA binding
    		•  2.49094746544717 bayes_pls_golite062009
  • binding
    		•  2.47395644967726 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64539435934931 bayes_pls_golite062009
  • structural molecule activity
    		•  1.39201458088376 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.06250847754412 bayes_pls_golite062009
  • protein binding
    		•  1.04044934052933 bayes_pls_golite062009
  • DNA binding
    		•  0.946847037737779 bayes_pls_golite062009
  • RNA cap binding
    		•  0.66277586901495 bayes_pls_golite062009
  • transcription factor activity
    		•  0.362911773502049 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  4.05046860305563 bayes_pls_golite062009
  • binding
    		•  2.36800795249393 bayes_pls_golite062009
  • mRNA binding
    		•  2.35042158577052 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.59410102249793 bayes_pls_golite062009
  • structural molecule activity
    		•  1.3916221897201 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.08645493064764 bayes_pls_golite062009
  • DNA binding
    		•  0.956143892328242 bayes_pls_golite062009
  • protein binding
    		•  0.914877292844892 bayes_pls_golite062009
  • transcription factor activity
    		•  0.371244009721798 bayes_pls_golite062009
  • RNA cap binding
    		•  0.357520253345298 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle