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Protein Overview: gi|6503305, gi|2...

General Information:
Name(s) found: gi|6503305 [NCBI NR]
gi|28416525 [NCBI NR]
gi|25406707 [NCBI NR]
gi|22654971 [NCBI NR]
gi|15220892 [NCBI NR]
Description(s) found:
Found 15 descriptions.
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  • gi|6503305|gb|AAF14681.1|AC011713_29 Contains similarity to gb|U19615 LET 858 gene from Caenorhabditis elegans. ESTs gb|AI995150, gb|H76674 and gb|R84035 come from this gene. [Arabidopsis thaliana] [NCBI NR]
  • gi|28416525|gb|AAO42793.1| At1g80930/F23A5_23 [Arabidopsis thaliana] [NCBI NR]
  • pir||C96842 hypothetical protein F23A5.29 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22654971|gb|AAM98078.1| At1g80930/F23A5_23 [Arabidopsis thaliana] [NCBI NR]
  • gi|15220892|ref|NP_178208.1| MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 900 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytosol [IDA]
    Biological Process: RNA metabolic process [IEA]
    translation [ISS]
    Molecular Function: protein binding [IEA]
    RNA binding [ISS]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRHGSSSDE EERVRRRDRR RRERSPDVRR SRTETDDVAR RVRVSDDEDR KSSRRDLEIG  60
   61 GTVADGEGRR GDKVRRKETS DDEELARRSR KDRKEANSGS EDDRGKRIEV DSDGDGERRV 120
  121 NKGRNTDRVR ADTSSDEEDD LKGNKKEPME VDDDYGRRGR RRSPKVMEKQ GRERSHRGSR 180
  181 VIADKPSDEE DDRQRSRGGR RESQRKRRDH RASDDDEEGE IRSERRGKEK NDRGSEGLLK 240
  241 RDRRERDLTD GHENGSRRRE SERKDRSRRD DGVRDEKERR HNDKYDDSQR DKLRKEDSRK 300
  301 REEKKIEVPK PKLAELNPSE NNAMALGKTG GVYIPPFKLA RMMKEVEDKS SVEYQRLTWD 360
  361 ALRKSINGLV NKVNASNIKN IIPELFAENL IRGRGLFCRS CMKSQMASPG FTDVFAALVA 420
  421 VINAKFPEVA ELLLKRVVLQ LKRAYKRNDK PQLLAAVKFI AHLVNQQVAE EIIALELVTI 480
  481 LLGDPTDDSV EVAVGFVTEC GAMLQDVSPR GLNGIFERFR GILHEGEIDK RVQYLIESLF 540
  541 ATRKAKFQGH PAVRPELDLV EEKYSHDLSL DHEIDPETAL DIFKPDPDFV ENEKKYEALK 600
  601 KELLGDEESE DEDGSDASSE DNDEEEDESD EEDEEQMRIR DETETNLVNL RRTIYLTIMS 660
  661 SVDFEEAGHK LLKIKLEPGQ EMELCIMLLE CCSQERTYLR YYGLLGQRFC MINKIHQENF 720
  721 EKCFVQQYSM IHRLETNKLR NVAKFFAHLL GTDALPWHVL AYIRLTEEDT TSSSRIFIKI 780
  781 LFQELSEHLG IRLLNERLQD PTMQESLESI FPKDNPKNTR FAINFFTSIG LGGITENLRE 840
  841 YLKNMPSLIM QRQKQVAESE SGSSSGSDSS DSESESESGS SSSSSSDESD REKRKRRRRS 900
  901

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] MSA 3.216995 View MSA. No confident structure predictions are available.
    2 View Details [198..328] deduced N/A No confident structure predictions are available.
    3 View Details [329..567] PSI-BLAST 30.69897 Eukaryotic initiation factor eIF4G
    4 View Details [568..673] deduced N/A No confident structure predictions are available.
    5 View Details [674..900] MSA 2.111948 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle