| Protein: | SKI8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 397 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKI8.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-93 | [2..396] | [911..1251] |
|
|
5.0E-90 | [2..396] | [1144..1484] |
|
Region A: Residues: [1-397] |
1 11 21 31 41 51
| | | | | |
1 MSKVFIATAN AGKAHDADIF SVSACNSFTV SCSGDGYLKV WDNKLLDNEN PKDKSYSHFV 60
61 HKSGLHHVDV LQAIERDAFE LCLVATTSFS GDLLFYRITR EDETKKVIFE KLDLLDSDMK 120
121 KHSFWALKWG ASNDRLLSHR LVATDVKGTT YIWKFHPFAD ESNSLTLNWS PTLELQGTVE 180
181 SPMTPSQFAT SVDISERGLI ATGFNNGTVQ ISELSTLRPL YNFESQHSMI NNSNSIRSVK 240
241 FSPQGSLLAI AHDSNSFGCI TLYETEFGER IGSLSVPTHS SQASLGEFAH SSWVMSLSFN 300
301 DSGETLCSAG WDGKLRFWDV KTKERITTLN MHCDDIEIEE DILAVDEHGD SLAEPGVFDV 360
361 KFLKKGWRSG MGADLNESLC CVCLDRSIRW FREAGGK
|
| Detection Method: |  |
| Confidence: | 61.0 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 3.12192428374026 | bayes_pls_golite062009 | |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| RNA binding | 2.1927334052131 | bayes_pls_golite062009 |
| transcription regulator activity | 1.95667720244696 | bayes_pls_golite062009 |
| nucleic acid binding | 1.90457914882449 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.7032681012791 | bayes_pls_golite062009 |
| structural molecule activity | 1.47448876401574 | bayes_pls_golite062009 |
| DNA binding | 1.38475369554616 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transcription factor activity | 0.804334981068351 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.722742354759599 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.625780732991652 | bayes_pls_golite062009 |
| transcription repressor activity | 0.560226369775279 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.48827205019881 | bayes_pls_golite062009 |
| transcription factor binding | 0.412844855996155 | bayes_pls_golite062009 |
| snoRNA binding | 0.347797037104681 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.2578464839973 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.19391619547146 | bayes_pls_golite062009 |
| DNA helicase activity | 0.0403785360444822 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.00954741955203087 | bayes_pls_golite062009 |
| actin binding | 0.00606924241186668 | bayes_pls_golite062009 |
