| Protein: | MIG2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 382 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIG2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..380] | [374..751] |
|
|
0.0 | [2..380] | [235..612] |
|
|
0.0 | [2..380] | [413..790] |
|
Region A: Residues: [1-66] |
1 11 21 31 41 51
| | | | | |
1 MPKKQTNFPV DNENRPFRCD TCHRGFHRLE HKKRHLRTHT GEKPHHCAFP GCGKSFSRSD 60
61 ELKRHM
|
| Detection Method: |  |
| Confidence: | 103.927757 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.790771220986801 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.53991278722671 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [67-117] |
1 11 21 31 41 51
| | | | | |
1 RTHTGQSQRR LKKASVQKQE FLTVSGIPTI ASGVMIHQPI PQVLPANMAI N
|
| Detection Method: | |
| Confidence: | 103.927757 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [118-202] |
1 11 21 31 41 51
| | | | | |
1 VQAVNGGNII HAPNAVHPMV IPIMAQPAPI HASAASFQPA TSPMPISTYT PVPSQSFTSF 60
61 QSSIGSIQSN SDVSSIFSNM NVRVN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.397 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.408 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.620 | a.130.1 | Chorismate mutase II |
| View | Download | 0.373 | d.45.1 | ClpS-like |
| View | Download | 0.465 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.363 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.351 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.349 | d.26.1 | FKBP-like |
| View | Download | 0.347 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.336 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.333 | a.28.1 | ACP-like |
| View | Download | 0.329 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.325 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.324 | a.11.2 | Second domain of FERM |
| View | Download | 0.322 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.308 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.305 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.246 | g.39.1 | Glucocorticoid receptor-like (DNA-binding domain) |
| View | Download | 0.213 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.210 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.204 | a.1.1 | Globin-like |
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.790771220986801 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.53991278722671 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [203-255] |
1 11 21 31 41 51
| | | | | |
1 TPRSVPNSPN DGYLHQQHIP QQYQHQTASP SVAKQQKTFA HSLASALSTL QKR
|
| Detection Method: | |
| Confidence: | 128.68867 |
| Match: | 1lu6A_ |
| Description: | No description for 1lu6A_ was found. |
|
Region A: Residues: [256-382] |
1 11 21 31 41 51
| | | | | |
1 TPVSAPSTTI ESPSSPSDSS HTSASSSAIS LPFSNAPSQL AVAKELESVY LDSNRYTTKT 60
61 RRERAKFEIP EEQEEDTNNS SSGSNEEEHE SLDHESSKSR KKLSGVKLPP VRNLLKQIDV 120
121 FNGPKRV
|
| Detection Method: | |
| Confidence: | 128.68867 |
| Match: | 1lu6A_ |
| Description: | No description for 1lu6A_ was found. |
