| Protein: | PHO4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 312 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
|
Region A: Residues: [1-247] |
1 11 21 31 41 51
| | | | | |
1 MGRTTSEGIH GFVDDLEPKS SILDKVGDFI TVNTKRHDGR EDFNEQNDEL NSQENHNSSE 60
61 NGNENENEQD SLALDDLDRA FELVEGMDMD WMMPSHAHHS PATTATIKPR LLYSPLIHTQ 120
121 SAVPVTISPN LVATATSTTS ANKVTKNKSN SSPYLNKRRG KPGPDSATSL FELPDSVIPT 180
181 PKPKPKPKQY PKVILPSNST RRVSPVTAKT SSSAEGVVVA SESPVIAPHG SSHSRSLSKR 240
241 RSSGALV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [248-312] |
1 11 21 31 41 51
| | | | | |
1 DDDKRESHKH AEQARRNRLA VALHELASLI PAEWKQQNVS AAPSKATTVE AACRYIRHLQ 60
61 QNVST
|
| Detection Method: | |
| Confidence: | 273.68867 |
| Match: | 1a0aA_ |
| Description: | Pho4 B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.38658950816179 | bayes_pls_golite062009 |
| DNA binding | 4.94162117310222 | bayes_pls_golite062009 |
| nucleic acid binding | 4.64041369991064 | bayes_pls_golite062009 |
| transcription factor activity | 4.57572673546692 | bayes_pls_golite062009 |
| binding | 4.34145697128117 | bayes_pls_golite062009 |
| transcription factor binding | 2.61163564741984 | bayes_pls_golite062009 |
| transcription activator activity | 2.5495467409976 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.48787404513864 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.23044824326772 | bayes_pls_golite062009 |
| protein binding | 1.65995700436208 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.52770895937238 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 1.43264235539529 | bayes_pls_golite062009 |
| sterol response element binding | 1.35908389783271 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.05787100777909 | bayes_pls_golite062009 |
| transcription repressor activity | 0.955588849035129 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.82134057325852 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.672485914465871 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.3513586903977 | bayes_pls_golite062009 |
