| Protein: | UBC6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 250 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBC6.
| Description | E-value | Query Range |
Subject Range |
|
|
9.0E-69 | [1..250] | [1..250] |
|
|
6.0E-60 | [1..249] | [1..236] |
|
|
1.0E-59 | [2..250] | [9..254] |
|
|
6.0E-59 | [1..249] | [1..236] |
|
|
1.0E-57 | [1..249] | [1..234] |
|
|
4.0E-57 | [1..249] | [1..240] |
|
|
5.0E-57 | [1..250] | [1..253] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MATKQAHKRL TKEYKLMVEN PPPYILARPN EDNILEWHYI ITGPADTPYK GGQYHGTLTF 60
61 PSDYPYKPPA IRMITPNGRF KPNTRLCLSM SDYHPDTWNP GWSVSTILNG LLSFMTSDEA 120
121 TTGSITTSDH QKKTLARNSI SYNTFQNVRF KLIFPEVVQE NVETLEKRKL DEGDAANT
|
| Detection Method: |  |
| Confidence: | 193.917458 |
| Match: | 1qcqA_ |
| Description: | Ubiquitin conjugating enzyme, UBC |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein ligase activity | 6.4298500488854 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 6.42696952904883 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 5.49452788881858 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 3.8110076681004 | bayes_pls_golite062009 |
| ligase activity | 1.88059319399119 | bayes_pls_golite062009 |
| catalytic activity | 0.891402822028799 | bayes_pls_golite062009 |
| protein binding | 0.749259816502314 | bayes_pls_golite062009 |
| binding | 0.7313332818323 | bayes_pls_golite062009 |
| NEDD8 ligase activity | 0.715654744941217 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.452109988422698 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.182854082413338 | bayes_pls_golite062009 |
| protein kinase activity | 0.157252474301695 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.133142640608253 | bayes_pls_golite062009 |
| kinase activity | 0.0500350353657541 | bayes_pls_golite062009 |
|
Region A: Residues: [179-250] |
1 11 21 31 41 51
| | | | | |
1 GDETEDPFTK AAKEKVISLE EILDPEDRIR AEQALRQSEN NSKKDGKEPN DSSSMVYIGI 60
61 AIFLFLVGLF MK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.741 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.497 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.511 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.469 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.592 | a.112.1 | Description not found. |
| View | Download | 0.453 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.452 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.441 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.417 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.415 | a.30.1 | ROP protein |
| View | Download | 0.404 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.396 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.387 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.386 | a.74.1 | Cyclin-like |
| View | Download | 0.386 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.384 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.382 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.364 | a.64.1 | Saposin |
| View | Download | 0.361 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.331 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.323 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.316 | a.54.1 | Domain of early E2A DNA-binding protein, ADDBP |
| View | Download | 0.300 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.294 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.285 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.281 | a.7.7 | BAG domain |
| View | Download | 0.269 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.266 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.260 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.260 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.260 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.256 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.253 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.250 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.244 | a.2.3 | Chaperone J-domain |
| View | Download | 0.239 | a.60.8 | HRDC-like |
| View | Download | 0.239 | a.17.1 | p8-MTCP1 |
| View | Download | 0.233 | a.4.1 | Homeodomain-like |
| View | Download | 0.233 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.230 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.226 | a.118.8 | TPR-like |
| View | Download | 0.223 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.217 | c.47.1 | Thioredoxin-like |
| View | Download | 0.213 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.209 | a.3.1 | Cytochrome c |
| View | Download | 0.208 | a.118.1 | ARM repeat |
| View | Download | 0.207 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.207 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.206 | a.4.5 | "Winged helix" DNA-binding domain |
